@article {4941, title = {Biogeographic survey of soil bacterial communities across Antarctica}, journal = {Microbiome}, volume = {12}, year = {2024}, month = {01/2024}, abstract = {

Antarctica and its unique biodiversity are increasingly at risk from the effects of global climate change and other human influences. A significant recent element underpinning strategies for Antarctic conservation has been the development of a system of Antarctic Conservation Biogeographic Regions (ACBRs). The datasets supporting this classification are, however, dominated by eukaryotic taxa, with contributions from the bacterial domain restricted to Actinomycetota and Cyanobacteriota. Nevertheless, the ice-free areas of the Antarctic continent and the sub-Antarctic islands are dominated in terms of diversity by bacteria. Our study aims to generate a comprehensive phylogenetic dataset of Antarctic bacteria with wide geographical coverage on the continent and sub-Antarctic islands, to investigate whether bacterial diversity and distribution is reflected in the current ACBRs.

}, keywords = {LTER-MCM, Antarctic Conservation Biogeographic Regions (ACBRs), Antarctic soil microbiome, bioclimatic variables, biogeography, microbial diversity, regionalization, soils}, doi = {10.1186/s40168-023-01719-3}, url = {https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01719-3}, author = {Varliero, Gilda and Lebre, Pedro H. and Byron Adams and Steven L. Chown and Peter Convey and Dennis, Paul G. and Fan, Dandan and Ferrari, Belinda and Frey, Beat and Hogg, Ian D. and Hopkins, David W. and Kong, Weidong and Makhalanyane, Thulani and Matcher, Gwynneth and Newsham, Kevin K. and Stevens, Mark I. and Weigh, Katherine V. and Cowan, Don A.} } @article {4940, title = {McMurdo Dry Valley lake edge {\textquoteleft}moats{\textquoteright}: The ecological intersection between terrestrial and aquatic polar desert habitat}, journal = {Antarctic Science}, year = {2024}, month = {04/2024}, pages = {1 - 17}, abstract = {

Aquatic ecosystems - lakes, ponds and streams - are hotspots of biodiversity in the cold and arid environment of Continental Antarctica. Environmental change is expected to increasingly alter Antarctic aquatic ecosystems and modify the physical characteristics and interactions within the habitats that they support. Here, we describe physical and biological features of the peripheral \‘moat\’ of a closed-basin Antarctic lake. These moats mediate connectivity amongst streams, lake and soils. We highlight the cyclical moat transition from a frozen winter state to an active open-water summer system, through refreeze as winter returns. Summer melting begins at the lakebed, initially creating an ice-constrained lens of liquid water in November, which swiftly progresses upwards, creating open water in December. Conversely, freezing progresses slowly from the water surface downwards, with water at 1 m bottom depth remaining liquid until May. Moats support productive, diverse benthic communities that are taxonomically distinct from those under the adjacent permanent lake ice. We show how ion ratios suggest that summer exchange occurs amongst moats, streams, soils and sub-ice lake water, perhaps facilitated by within-moat density-driven convection. Moats occupy a small but dynamic area of lake habitat, are disproportionately affected by recent lake-level rises and may thus be particularly vulnerable to hydrological change.

}, keywords = {LTER-MCM, connectivity, ecosystem, ice, microbial mats, transition}, issn = {0954-1020}, doi = {10.1017/S0954102024000087}, url = {https://www.cambridge.org/core/journals/antarctic-science/article/mcmurdo-dry-valley-lake-edge-moats-the-ecological-intersection-between-terrestrial-and-aquatic-polar-desert-habitats/31D94DD51E651603482A3AE6E8A52A57}, author = {Stone, Michael S. and Devlin, Shawn and Ian Hawes and Kathleen A. Welch and Michael N. Gooseff and Cristina D. Takacs-Vesbach and Rachael M. Morgan-Kiss and Byron Adams and John E. Barrett and John C. Priscu and Peter T. Doran} } @article {4928, title = {Remotely characterizing photosynthetic biocrust in snowpack-fed microhabitats of Taylor Valley, Antarctica}, journal = {Science of Remote Sensing}, year = {2024}, month = {02/2024}, pages = {100120}, abstract = {

Microbial communities are the primary drivers of carbon cycling in the McMurdo Dry Valleys of Antarctica. Dense microbial mats, consisting mainly of photosynthetic cyanobacteria, occupy aquatic areas associated with streams and lakes. Other microbial communities also occur at lower densities as patchy surface biological soil crusts (hereafter, biocrusts) across the terrestrial landscape. Multispectral satellite data have been used to model microbial mat abundance in high-density areas like stream and lake margins, but no previous studies have investigated the lower detection limits of biocrusts. Here, we describe remote sensing and field-based survey and sampling approaches to study the detectability and distribution of biocrusts in the McMurdo Dry Valleys. Using a combination of multi- and hyperspectral tools and spectral linear unmixing, we modeled the abundances of biocrust in eastern Taylor Valley. Our spectral approaches can detect low masses of biocrust material in laboratory microcosms down to biocrust concentrations of 1\% by mass. These techniques also distinguish the spectra of biocrust from both surface rock and mineral signatures from orbit. We found that biocrusts are present throughout the soils of eastern Taylor Valley and are associated with diverse underlying soil communities. The densest biocrust communities identified in this study had total organic carbon 5x greater than the content of typical arid soils. The most productive biocrusts were located downslope of melting snowpacks in unique soil ecosystems that are distinct from the surrounding arid landscape. There are similarities between the snowpack and stream sediment communities (high diversity of soil invertebrates) as well as their ecosystem properties (e.g., persistence of liquid water, high transfer of available nutrients, lower salinity from flushing) compared to the typical arid terrestrial ecosystem of the dry valleys. Our approach extends the capability of orbital remote sensing of photosynthetic communities out of the aquatic margins and into the drier soils which comprise most of this landscape. This interdisciplinary work is critical for measuring and monitoring terrestrial carbon stocks and predicting future ecosystem dynamics in this currently water-limited but increasingly dynamic Antarctic landscape, which is particularly climate-sensitive and difficult to access.

}, keywords = {LTER-MCM, Antarctica, biocrust, carbon, reflectance spectroscopy, snow, soil ecology}, issn = {26660172}, doi = {10.1016/j.srs.2024.100120}, url = {https://www.sciencedirect.com/science/article/pii/S266601722400004X}, author = {Power, Sarah N. and Salvatore, Mark R. and Eric R. Sokol and Lee F. Stanish and Borges, Schuyler R. and Byron Adams and John E. Barrett} } @article {4842, title = {Biogeography and genetic diversity of terrestrial mites in the Ross Sea region, Antarctica}, journal = {Genes}, volume = {14}, year = {2023}, month = {03/2023}, pages = {606}, abstract = {

Free-living terrestrial mites (Acari) have persisted through numerous glacial cycles in Antarctica. Very little is known, however, of their genetic diversity and distribution, particularly within the Ross Sea region. To redress this gap, we sampled mites throughout the Ross Sea region, East Antarctica, including Victoria Land and the Queen Maud Mountains (QMM), covering a latitudinal range of 72\–85 \°S, as well as Lauft Island near Mt. Siple (73 \°S) in West Antarctica and Macquarie Island (54 \°S) in the sub-Antarctic. We assessed genetic diversity using mitochondrial cytochrome c oxidase subunit I gene sequences (COI-5P DNA barcode region), and also morphologically identified voucher specimens. We obtained 130 sequences representing four genera: Nanorchestes (n = 30 sequences), Stereotydeus (n = 46), Coccorhagidia (n = 18) and Eupodes (n = 36). Tree-based analyses (maximum likelihood) revealed 13 genetic clusters, representing as many as 23 putative species indicated by barcode index numbers (BINs) from the Barcode of Life Datasystems (BOLD) database. We found evidence for geographically-isolated cryptic species, e.g., within Stereotydeus belli and S. punctatus, as well as unique genetic groups occurring in sympatry (e.g., Nanorchestes spp. in QMM). Collectively, these data confirm high genetic divergence as a consequence of geographic isolation over evolutionary timescales. From a conservation perspective, additional targeted sampling of understudied areas in the Ross Sea region should be prioritised, as further diversity is likely to be found in these short-range endemic mites.

}, keywords = {LTER-MCM, Acari, Antarctic conservation, DNA barcoding, geographic isolation, speciation}, doi = {10.3390/genes14030606}, url = {https://www.mdpi.com/2073-4425/14/3/606}, author = {Gemma E. Collins and Young, Monica R. and Peter Convey and Steven L. Chown and Craig S Cary and Byron Adams and Diana H. Wall and Hogg, Ian D.} } @article {4944, title = {Change at 85 degrees south: Shackleton Glacier region proglacial lakes from 1960 to 2020}, journal = {Annals of Glaciology}, year = {2023}, month = {05/2023}, abstract = {

Over the last two decades, anomalous warming events have been observed in coastal Antarctic regions. While these events have been documented in the Ross Sea sector, the Antarctic interior is believed to have been buffered from warming. In this work, we present data from lakes located near Mt. Heekin and Thanksgiving Valley (~85\° S) along the Shackleton Glacier, which are believed to be the southern-most Antarctic dry valley lakes. In 2018, the lakes were characterized, repeat satellite images were examined, and lake water chemistry was measured. Our analysis shows that lake areas recently increased, and the water-soluble ion chemistry indicates a flushing of salts from periglacial soils, likely from increased glacial melt as illustrated by water isotope data. Our results show that high southern latitude ice-free areas have likely been affected by warm pulses over the past 60 years and these pulses may be quasi-synchronous throughout the Transantarctic Mountains.

}, keywords = {LTER-MCM, Antarctic glaciology, climate change, meltwater chemistry}, issn = {0260-3055}, doi = {10.1017/aog.2023.27}, url = {https://www.cambridge.org/core/journals/annals-of-glaciology/article/change-at-85-degrees-south-shackleton-glacier-region-proglacial-lakes-from-1960-to-2020/565D96AD7AE72BD22C49CCB772867AC4}, author = {Melisa A. Diaz and Christopher B. Gardner and Elliot, David H. and Byron Adams and W. Berry Lyons} } @article {4833, title = {Ecological stoichiometry drives the evolution of soil nematode life history traits}, journal = {Soil Biology and Biochemistry}, volume = {177}, year = {2023}, month = {02/2023}, pages = {108891}, abstract = {

Ecological stoichiometry is a useful theoretical framework for understanding the sources and controls on nutrient availability that structure the composition and diversity of biotic communities. One such relationship is that organismal development rate is positively linked to cellular Phosphorus (P). We hypothesized that P availability, relative to other nutrients, e.g., nitrogen and carbon, would drive the evolution of traits associated with organismal growth and development. We examined the effects of P availability both in situ and in vitro, on free-living soil nematodes. We found that P-deficient environments produce predictable changes in the ecology and evolution of important life history traits. Our results identify altered rRNA gene copy number and subsequent changes in gene expression and protein synthesis as mechanisms by which P-deficiency influences these traits. These findings have important implications for explaining soil ecological and evolutionary patterns across multiple levels of organization, including the structure and functioning of organisms, populations, communities, and ecosystems.

}, keywords = {LTER-MCM, elemental stoichiometry, growth rate hypothesis, life history theory, molecular evolution, nematoda, rRNA}, doi = {10.1016/j.soilbio.2022.108891}, url = {https://www.sciencedirect.com/science/article/pii/S0038071722003480}, author = {Xue, Xia and Bishwo N. Adhikari and Ball, Becky and John E. Barrett and Miao, Jinxin and Perkes, Ammon and Martin, Mac and Breana L. Simmons and Diana H. Wall and Byron Adams} } @article {4943, title = {Strong dispersal limitation of microbial communities at Shackleton Glacier, Antarctica}, journal = {mSystems}, volume = {8}, year = {2023}, month = {01/2023}, abstract = {

Microbial communities can be structured by both deterministic and stochastic processes, but the relative importance of these processes remains unknown. The ambiguity partly arises from an inability to disentangle soil microbial processes from confounding factors, such as aboveground plant communities or anthropogenic disturbance. In this study, we characterized the relative contributions of determinism and stochasticity to assembly processes of soil bacterial communities across a large environmental gradient of undisturbed Antarctic soils. We hypothesized that harsh soils would impose a strong environmental selection on microbial communities, whereas communities in benign soils would be structured largely by dispersal. Contrary to our expectations, dispersal was the dominant assembly mechanism across the entire soil environmental gradient, including benign environments. The microbial community composition reflects slowly changing soil conditions and dispersal limitation of isolated sites. Thus, stochastic processes, as opposed to deterministic, are primary drivers of soil ecosystem assembly across space at our study site. This is especially surprising given the strong environmental constraints on soil microorganisms in one of the harshest environments on the planet, suggesting that dispersal could be a driving force in microbial community assembly in soils worldwide.

}, keywords = {LTER-MCM, community assembly, determinism, dispersal, niche, stochasticity}, doi = {10.1128/msystems.01254-22}, url = {https://journals.asm.org/doi/full/10.1128/msystems.01254-22}, author = {Lemoine, Nathan P. and Byron Adams and Melisa A. Diaz and Dragone, Nicholas B. and Franco, Andr{\'e} L. C. and Noah Fierer and W. Berry Lyons and Hogg, Ian D. and Diana H. Wall}, editor = {Lurgi, Miguel} } @article {4826, title = {Community assembly in the wake of glacial retreat: A meta-analysis}, journal = {Global Change Biology}, year = {2022}, month = {09/2022}, abstract = {

Antarctic biodiversity faces an unknown future with a changing climate. Most terrestrial biota is restricted to limited patches of ice-free land in a sea of ice, where they are adapted to the continent\&$\#$39;s extreme cold and wind and exploit microhabitats of suitable conditions. As temperatures rise, ice-free areas are predicted to expand, more rapidly in some areas than others. There is high uncertainty as to how species\&$\#$39; distributions, physiology, abundance, and survivorship will be affected as their habitats transform. Here we use current knowledge to propose hypotheses that ice-free area expansion (i) will increase habitat availability, though the quality of habitat will vary; (ii) will increase structural connectivity, although not necessarily increase opportunities for species establishment; (iii) combined with milder climates will increase likelihood of non-native species establishment, but may also lengthen activity windows for all species; and (iv) will benefit some species and not others, possibly resulting in increased homogeneity of biodiversity. We anticipate considerable spatial, temporal, and taxonomic variation in species responses, and a heightened need for interdisciplinary research to understand the factors associated with ecosystem resilience under future scenarios. Such research will help identify at-risk species or vulnerable localities and is crucial for informing environmental management and policymaking into the future.

}, keywords = {LTER-MCM, chronosequence, climate change, community assembly, deglaciation, ecological succession, glacial forefields, soil ecosystems}, doi = {10.1111/gcb.16427}, url = {https://onlinelibrary.wiley.com/doi/10.1111/gcb.16427}, author = {Pothula, Satyendra K. and Byron Adams} } @article {4718, title = {Elevational constraints on the composition and genomic attributes of microbial communities in Antarctic soils}, journal = {mSystems}, volume = {7}, year = {2022}, month = {01/2022}, pages = {e01330-21}, abstract = {

The inland soils found on the Antarctic continent represent one of the more challenging environments for microbial life on Earth. Nevertheless, Antarctic soils harbor unique bacterial and archaeal (prokaryotic) communities able to cope with extremely cold and dry conditions. These communities are not homogeneous, and the taxonomic composition and functional capabilities (genomic attributes) of these communities across environmental gradients remain largely undetermined. We analyzed the prokaryotic communities in soil samples collected from across the Shackleton Glacier region of Antarctica by coupling quantitative PCR, marker gene amplicon sequencing, and shotgun metagenomic sequencing. We found that elevation was the dominant factor explaining differences in the structures of the soil prokaryotic communities, with the drier and saltier soils found at higher elevations harboring less diverse communities and unique assemblages of cooccurring taxa. The higher-elevation soil communities also had lower maximum potential growth rates (as inferred from metagenome-based estimates of codon usage bias) and an overrepresentation of genes associated with trace gas metabolism. Together, these results highlight the utility of assessing community shifts across pronounced environmental gradients to improve our understanding of the microbial diversity found in Antarctic soils and the strategies used by soil microbes to persist at the limits of habitability.

}, keywords = {LTER-MCM, Antarctica, microbial ecology, soil microbiology, soils}, doi = {10.1128/msystems.01330-21}, url = {https://journals.asm.org/doi/full/10.1128/msystems.01330-21}, author = {Dragone, Nicholas B. and Henley, Jessica B. and Holland-Moritz, Hannah and Melisa A. Diaz and Hogg, Ian D. and W. Berry Lyons and Diana H. Wall and Byron Adams and Noah Fierer}, editor = {Mackelprang, Rachel} } @article {4689, title = {Response of Antarctic soil fauna to climate-driven changes since the Last Glacial Maximum}, journal = {Global Change Biology}, volume = {28}, year = {2022}, month = {01/2022}, abstract = {

Understanding how terrestrial biotic communities have responded to glacial recession since the Last Glacial Maximum (LGM) can inform present and future responses of biota to climate change. In Antarctica, the Transantarctic Mountains (TAM) have experienced massive environmental changes associated with glacial retreat since the LGM, yet we have few clues as to how its soil invertebrate-dominated animal communities have responded. Here, we surveyed soil invertebrate fauna from above and below proposed LGM elevations along transects located at 12 features across the Shackleton Glacier region. Our transects captured gradients of surface ages possibly up to 4.5 million years and the soils have been free from human disturbance for their entire history. Our data support the hypothesis that soils exposed during the LGM are now less suitable habitats for invertebrates than those that have been exposed by deglaciation following the LGM. Our results show that faunal abundance, community composition, and diversity were all strongly affected by climate-driven changes since the LGM. Soils more recently exposed by glacial recession (as indicated by distances from present ice surfaces) had higher faunal abundances and species richness than older exposed soils. Higher abundances of the dominant nematode Scottnema were found in older exposed soils, while Eudorylaimus, Plectus, tardigrades, and rotifers preferentially occurred in more recently exposed soils. Approximately 30\% of the soils from which invertebrates could be extracted had only Scottnema, and these single-taxon communities occurred more frequently in soils exposed for longer periods of time. Our structural equation modeling of abiotic drivers highlighted soil salinity as a key mediator of Scottnema responses to soil exposure age. These changes in soil habitat suitability and biotic communities since the LGM indicate that Antarctic terrestrial biodiversity throughout the TAM will be highly altered by climate warming.

}, keywords = {LTER-MCM, biodiversity, climate change, glacial retreat, nematodes, Shackleton Glacier, soil invertebrates}, issn = {1354-1013}, doi = {10.1111/gcb.15940}, url = {https://onlinelibrary.wiley.com/doi/10.1111/gcb.15940}, author = {Franco, Andr{\'e} L. C. and Byron Adams and Melisa A. Diaz and Lemoine, Nathan P. and Dragone, Nicholas B. and Noah Fierer and W. Berry Lyons and Hogg, Ian D. and Diana H. Wall} } @article {4838, title = {The time is right for an Antarctic biorepository network}, journal = {Proceedings of the National Academy of Sciences}, volume = {119}, year = {2022}, month = {12/2022}, abstract = {

Antarctica is a central driver of the Earth\’s climate and health. The Southern Ocean surrounding Antarctica serves as a major sink for anthropogenic CO2 and heat, and the loss of Antarctic ice sheets contributes significantly to sea level rise and will continue to do so as the loss of ice sheets accelerates, with sufficient water stores to raise sea levels by 58 m. Antarctica\&$\#$39;s marine environment is home to a number of iconic species, and the terrestrial realm harbors a remarkable oasis for life, much of which has yet to be discovered. Distinctive oceanographic features of the Southern Ocean\—including the Antarctic Circumpolar Current, the Antarctic Polar Front, and exceptional depths surrounding the continent\—coupled with chronically cold temperatures have fostered the evolution of a vast number of uniquely coldadapted species, many of which are found nowhere else on the Earth. The Antarctic marine biota, for example, displays the highest level of species endemism on the Earth. However, warming, ocean acidification, pollution, and commercial exploitation threaten the integrity of Antarctic ecosystems. Understanding changes in the biota and its capacities for adaptation is imperative for establishing effective policies for mitigating the impacts of climate change and sustaining the Antarctic ecosystems that are vital to global health.

}, keywords = {LTER-MCM}, issn = {0027-8424}, doi = {10.1073/pnas.2212800119}, url = {https://www.pnas.org/doi/10.1073/pnas.2212800119}, author = {O{\textquoteright}Brien, Kristin M. and Crockett, Elizabeth L. and Byron Adams and Amsler, Charles D. and Appiah-Madson, Hannah J. and Collins, Allen and Desvignes, Thomas and Detrich, H. William and Distel, Daniel L. and Eppley, Sarah M. and Frable, Benjamin W. and Franz, Nico M. and Grim, Jeffrey M. and Kocot, Kevin M. and Mahon, Andrew R. and Mayfield-Meyer, Teresa J. and Jill A. Mikucki and Moser, William E. and Schmull, Michaela and Seid, Charlotte A. and Smith, Craig R. and Todgham, Anne E. and Watkins-Colwell, Gregory J.} } @article {4585, title = {Antarctic water tracks: Microbial community responses to variation in soil moisture, pH, and salinity}, journal = {Frontiers in Microbiology}, volume = {12}, year = {2021}, month = {01/2021}, abstract = {

Ice-free soils in the McMurdo Dry Valleys select for taxa able to cope with challenging environmental conditions, including extreme chemical water activity gradients, freeze-thaw cycling, desiccation, and solar radiation regimes. The low biotic complexity of Dry Valley soils makes them well suited to investigate environmental and spatial influences on bacterial community structure. Water tracks are annually wetted habitats in the cold-arid soils of Antarctica that form briefly each summer with moisture sourced from snow melt, ground ice thaw, and atmospheric deposition via deliquescence and vapor flow into brines. Compared to neighboring arid soils, water tracks are highly saline and relatively moist habitats. They represent a considerable area (\∼5\–10 km2) of the Dry Valley terrestrial ecosystem, an area that is expected to increase with ongoing climate change. The goal of this study was to determine how variation in the environmental conditions of water tracks influences the composition and diversity of microbial communities. We found significant differences in microbial community composition between on- and off-water track samples, and across two distinct locations. Of the tested environmental variables, soil salinity was the best predictor of community composition, with members of the Bacteroidetes phylum being relatively more abundant at higher salinities and the Actinobacteria phylum showing the opposite pattern. There was also a significant, inverse relationship between salinity and bacterial diversity. Our results suggest water track formation significantly alters dry soil microbial communities, likely influencing subsequent ecosystem functioning. We highlight how Dry Valley water tracks could be a useful model system for understanding the potential habitability of transiently wetted environments found on the surface of Mars.

}, keywords = {LTER-MCM, Antarctica, extremophiles, Mars analog, microbial ecology, water tracks}, doi = {10.3389/fmicb.2021.616730}, url = {https://www.frontiersin.org/articles/10.3389/fmicb.2021.616730}, author = {George, Scott F. and Noah Fierer and Joseph S. Levy and Byron Adams} } @article {4627, title = {Connectivity: Insights from the U.S. Long Term Ecological Research Network}, journal = {Ecosphere}, volume = {12}, year = {2021}, month = {05/2021}, pages = {e03432}, abstract = {

Ecosystems across the United States are changing in complex and surprising ways. Ongoing demand for critical ecosystem services requires an understanding of the populations and communities in these ecosystems in the future. This paper represents a synthesis effort of the U.S. National Science Foundation-funded Long-Term Ecological Research (LTER) network addressing the core research area of \“populations and communities.\” The objective of this effort was to show the importance of long-term data collection and experiments for addressing the hardest questions in scientific ecology that have significant implications for environmental policy and management. Each LTER site developed at least one compelling case study about what their site could look like in 50\–100 yr as human and environmental drivers influencing specific ecosystems change. As the case studies were prepared, five themes emerged, and the studies were grouped into papers in this LTER Futures Special Feature addressing state change, connectivity, resilience, time lags, and cascading effects. This paper addresses the \“connectivity\” theme and has examples from the Phoenix (urban), Niwot Ridge (alpine tundra), McMurdo Dry Valleys (polar desert), Plum Island (coastal), Santa Barbara Coastal (coastal), and Jornada (arid grassland and shrubland) sites. Connectivity has multiple dimensions, ranging from multi-scalar interactions in space to complex interactions over time that govern the transport of materials and the distribution and movement of organisms. The case studies presented here range widely, showing how land-use legacies interact with climate to alter the structure and function of arid ecosystems and flows of resources and organisms in Antarctic polar desert, alpine, urban, and coastal marine ecosystems. Long-term ecological research demonstrates that connectivity can, in some circumstances, sustain valuable ecosystem functions, such as the persistence of foundation species and their associated biodiversity or, it can be an agent of state change, as when it increases wind and water erosion. Increased connectivity due to warming can also lead to species range expansions or contractions and the introduction of undesirable species. Continued long-term studies are essential for addressing the complexities of connectivity. The diversity of ecosystems within the LTER network is a strong platform for these studies.

}, keywords = {LTER-MCM, alpine tundra, Antarctic polar desert, arid grassland, arid shrubland, coastal, estuary, salt marsh, Special Feature: Forecasting Earth{\textquoteright}s Ecosystems with Long-Term Ecological Research, urban ecosystem}, issn = {2150-8925}, doi = {10.1002/ecs2.v12.510.1002/ecs2.3432}, url = {https://onlinelibrary.wiley.com/doi/10.1002/ecs2.3432}, author = {Iwaniec, David M. and Michael N. Gooseff and Suding, Katharine N. and Johnson, David Samuel and Reed, Daniel C. and Debra P. C. Peters and Byron Adams and John E. Barrett and Bestelmeyer, Brandon T. and Castorani, Max C. N. and Cook, Elizabeth M. and Davidson, Melissa J. and Groffman, Peter M. and Hanan, Niall P. and Huenneke, L and Johnson, Pieter T. J. and Diane M. McKnight and Miller, Robert J. and Okin, Gregory S. and Preston, Daniel L. and Rassweiler, Andrew and Ray, Chris and Osvaldo E. Sala and Schooley, Robert and Seastedt, Timothy and Spasojevic, Marko J. and Vivoni, Enrique R.} } @article {4583, title = {Genome analysis of Plectus murrayi, a nematode from continental Antarctica}, journal = {G3 Genes|Genomes|Genetics}, year = {2021}, month = {01/2021}, abstract = {

Plectus murrayi is one of the most common and locally abundant invertebrates of continental Antarctic ecosystems. Because it is readily cultured on artificial medium in the laboratory and highly tolerant to an extremely harsh environment, Plectus murrayi is emerging as a model organism for understanding the evolutionary origin and maintenance of adaptive responses to multiple environmental stressors, including freezing and desiccation. The de novo assembled genome of Plectus murrayi contains 225.741 million base pairs and a total of 14,689 predicted genes. Compared to Caenorhabditis elegans, the architectural components of Plectus murrayi are characterized by a lower number of protein-coding genes, fewer transposable elements, but more exons, than closely related taxa from less harsh environments. We compared the transcriptomes of lab-reared Plectus murrayi with wild-caught Plectus murrayi and found genes involved in growth and cellular processing were up-regulated in lab-cultured Plectus murrayi, while a few genes associated with cellular metabolism and freeze tolerance were expressed at relatively lower levels. Preliminary comparative genomic and transcriptomic analyses suggest that the observed constraints on P. murrayi genome architecture and functional gene expression, including genome decay and intron retention, may be an adaptive response to persisting in a biotically simplified, yet consistently physically harsh environment.

}, keywords = {LTER-MCM, gene loss, genome architecture, genome assembly, genome decay, Plectus murrayi}, doi = {10.1093/g3journal/jkaa045}, url = {https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkaa045/6044189}, author = {Xue, Xia and Suvorov, Anton and Fujimoto, Stanley and Dilman, Adler R. and Byron Adams} } @article {4488, title = {Genetic diversity of soil invertebrates corroborates timing estimates for past collapses of the West Antarctic Ice Sheet}, journal = {Proceedings of the National Academy of Sciences}, year = {2020}, month = {08/2020}, abstract = {

During austral summer field seasons between 1999 and 2018, we sampled at 91 locations throughout southern Victoria Land and along the Transantarctic Mountains for six species of endemic microarthropods (Collembola), covering a latitudinal range from 76.0\°S to 87.3\°S. We assembled individual mitochondrial cyto-chrome c oxidase subunit 1 (COI) sequences (n = 866) and found high levels of sequence divergence at both small (\<10 km) and large (\>600 km) spatial scales for four of the six Collembola species. We applied molecular clock estimates and assessed genetic divergences relative to the timing of past glacial cycles, including collapses of the West Antarctic Ice Sheet (WAIS). We found that genetically distinct lineages within three species have likely been isolated for at least 5.54 My to 3.52 My, while the other three species diverged more recently (\<2 My). We suggest that Collembola had greater dispersal opportunities under past warmer climates, via flotation along coastal margins. Similarly increased opportunities for dispersal may occur under contemporary climate warming scenarios, which could influence the genetic structure of extant populations. As Collembola are a living record of past landscape evolution within Antarctica, these findings provide biological evidence to support geological and glaciological estimates of historical WAIS dynamics over the last ca. 5 My.

}, keywords = {LTER-MCM, climate change, microarthropods, molecular clock, phylogeography, terrestrial biodiversity}, doi = {10.1073/pnas.2007925117}, url = {https://www.pnas.org/content/early/2020/08/19/2007925117}, author = {Gemma E. Collins and Hogg, Ian D. and Convey, Peter and Sancho, Leopoldo G. and Cowan, Don A. and W. Berry Lyons and Byron Adams and Diana H. Wall and Allan Green, T. G.} } @article {4471, title = {Geochemistry of aeolian material from the McMurdo Dry Valleys, Antarctica: Insights into Southern Hemisphere dust sources}, journal = {Earth and Planetary Science Letters}, volume = {547}, year = {2020}, month = {10/2020}, abstract = {

In the Southern Hemisphere, the major sources of dust and other aeolian materials are from Patagonia, South Africa, Australia, and New Zealand. Dust from Patagonia and New Zealand has been identified in ice cores throughout Antarctica, suggesting that during arid and windy periods, such as glacial periods, dust can be entrained and transported onto the continent. However, little information exists on modern Antarctic dust sources, transport, and its role in the Southern Hemisphere dust cycle. We present the first geochemical characterization of aeolian materials collected at five heights (between 5 cm and 100 cm) above the surface in four valleys within the McMurdo Dry Valleys, the largest ice-free area in Antarctica. Our mineralogy data indicate that these materials are primarily derived from local rocks of the McMurdo Volcanics, Ferrar Dolerite, Beacon Sandstone and Granite Harbor Intrusives, with varying contributions of each rock type dependent on the valley location. While major oxide, trace element and rare earth element data show that low elevation and coastal locations (with respect to the Ross Sea) are dominated by local sources, high elevation and inland locations have accumulated both local materials and dust from other distant Southern Hemisphere sources. This far-traveled material may not be accumulating today, but represents a paleo source that is resuspended from the soils. By geochemically \“fingerprinting\” aeolian materials from the MDV, we can better inform future studies on the transport of materials within Antarctica and between Southern Hemisphere land masses.

}, keywords = {LTER-MCM, aeolian material, Antarctica, major oxides, mineralogy, rare earth elements, trace elements}, doi = {10.1016/j.epsl.2020.116460}, url = {https://www.sciencedirect.com/science/article/pii/S0012821X20304040}, author = {Melisa A. Diaz and Welch, Susan A. and Sheets, J. M. and Kathleen A. Welch and Khan, Alia L. and Byron Adams and Diane M. McKnight and Craig S Cary and W. Berry Lyons} } @article {4420, title = {A global database of soil nematode abundance and functional group composition}, journal = {Scientific Data}, volume = {7}, year = {2020}, month = {03/2020}, abstract = {

As the most abundant animals on earth, nematodes are a dominant component of the soil community. they play critical roles in regulating biogeochemical cycles and vegetation dynamics within and across landscapes and are an indicator of soil biological activity. Here,\ we present a comprehensive global dataset of soil nematode abundance and functional group composition. This dataset includes 6,825 georeferenced soil samples from all continents and biomes. For geospatial mapping purposes these samples are aggregated into 1,933 unique 1-km pixels, each of which is linked to 73 global environmental covariate data layers. Altogether,\ this dataset can help to gain insight into the spatial distribution patterns of soil nematode abundance and community composition, and the environmental drivers shaping these patterns.

}, keywords = {LTER-MCM}, doi = {10.1038/s41597-020-0437-3}, url = {https://www.nature.com/articles/s41597-020-0437-3}, author = {van den Hoogen, Johan and Geisen, Stefan and Diana H. Wall and Wardle, D and Traunspurger, Walter and de Goede, Ron G. M. and Byron Adams and Ahmad, Wasim and Ferris, Howard and Richard D. Bardgett and Bonkowski, Michael and Campos-Herrera, Raquel and Cares, Juvenil E. and Caruso, Tancredi and de Brito Caixeta, Larissa and Chen, Xiaoyun and Costa, Sofia R. and Creamer, Rachel and da Cunha e Castro, Jos{\'e} and Dam, Marie and Djigal, Djibril and Escuer, Miguel and Griffiths, Bryan S. and Guti{\'e}rrez, Carmen and Hohberg, Karin and Kalinkina, Daria and Kardol, Paul and Kergunteuil, Alan and Korthals, Gerard and Krashevska, Valentyna and Kudrin, Alexey A. and Li, Qi and Liang, Wenju and Magilton, Matthew and Marais, Mariette and Mart{\'\i}n, Jos{\'e} Antonio Rodr{\'\i}guez and Matveeva, Elizaveta and Mayad, El Hassan and Mzough, E. and Mulder, Christian and Mullin, Peter and Neilson, Roy and Nguyen, T. A. Duong and Uffe N. Nielsen and Okada, Hiroaki and Rius, Juan Emilio Palomares and Pan, Kaiwen and Peneva, Vlada and Pellissier, Lo{\"\i}c and Carlos Pereira da Silva, Julio and Pitteloud, Camille and Powers, Thomas O. and Powers, Kirsten and Quist, Casper W. and Rasmann, Sergio and Moreno, Sara S{\'a}nchez and Scheu, Stefan and Set{\"a}l{\"a}, Heikki and Sushchuk, Anna and Tiunov, Alexei V. and Trap, Jean and Vesterg{\r a}rd, Mette and Villenave, Cecile and Waeyenberge, Lieven and Wilschut, Rutger and Wright, Daniel G. and Keith, Aidan M. and Yang, Jiue-in and Schmidt, Olaf and Bouharroud, R. and Ferji, Z. and van der Putten, Wim H. and Routh, Devin and Crowther, Thomas Ward} } @article {4490, title = {Shotgun metagenomics reveal a diverse assemblage of protists in a model Antarctic soil ecosystem}, journal = {Environmental Microbiology}, year = {2020}, month = {08/2020}, abstract = {

The soils of the McMurdo Dry Valleys (MDV) of Antarctica are established models for understanding fundamental processes in soil ecosystem functioning (e.g. ecological tipping points, community structuring, and nutrient cycling) because the extreme physical environment drastically reduces biodiversity and ecological complexity. Understanding the functioning of MDV soils requires in-depth knowledge of the diversity of MDV soil species. Protists, which contribute significantly to soil ecosystem functioning worldwide, remain poorly characterized in the MDV. To better assess the diversity of MDV protists, we performed shotgun metagenomics on 18 sites representing a variety of landscape features and edaphic variables. Our results show MDV soil protists are diverse at both the genus (155 of 281 eukaryote genera) and family (120) levels, but comprise only 6\% of eukaryotic reads. Protists are structured by moisture, total N, and distance from the local coast, and possess limited richness in arid (\<5\% moisture) and at high elevation sites, known drivers of communities in the MDV. High relative diversity and broad distribution of protists in our study promotes these organisms as key members of MDV soil microbiomes and the MDV as a useful system for understanding the contribution of soil protists to the structure of soil microbiomes.

}, keywords = {LTER-MCM, Antarctica, extremophiles, functional groups, metagenomics, protozoa, soil microbiology}, doi = {10.1111/1462-2920.15198}, url = {https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.15198}, author = {Thompson, Andrew R. and Geisen, Stefan and Byron Adams} } @article {4153, title = {Biotic interactions are an unexpected yet critical control on the complexity of an abiotically driven polar ecosystem}, journal = {Communications Biology}, volume = {2}, year = {2019}, month = {02/2019}, abstract = {

Abiotic and biotic factors control ecosystem biodiversity, but their relative contributions remain unclear. The ultraoligotrophic ecosystem of the Antarctic Dry Valleys, a simple yet highly heterogeneous ecosystem, is a natural laboratory well-suited for resolving the abiotic and biotic controls of community structure. We undertook a multidisciplinary investigation to capture ecologically relevant biotic and abiotic attributes of more than 500 sites in the Dry Valleys, encompassing observed landscape heterogeneities across more than 200 km2. Using richness of autotrophic and heterotrophic taxa as a proxy for functional complexity, we linked measured variables in a parsimonious yet comprehensive structural equation model that explained significant variations in biological complexity and identified landscape-scale and fine-scale abiotic factors as the primary drivers of diversity. However, the inclusion of linkages among functional groups was essential for constructing the best-fitting model. Our findings support the notion that biotic interactions make crucial contributions even in an extremely simple ecosystem.

}, keywords = {LTER-MCM}, doi = {10.1038/s42003-018-0274-5}, url = {https://www.nature.com/articles/s42003-018-0274-5}, author = {Charles K. Lee and Laughlin, Daniel C. and Bottos, Eric M. and Caruso, Tancredi and Joy, Kurt and John E. Barrett and Brabyn, Lars and Uffe N. Nielsen and Byron Adams and Diana H. Wall and D. W. Hopkins and Pointing, Steve B. and McDonald, Ian R. and Cowan, Don A. and Banks, Jonathan C. and Stichbury, Glen A. and Jones, Irfon and Zawar-Reza, Peyman and Katurji, Marwan and Hogg, Ian D. and Sparrow, Ashley D. and Storey, Bryan C. and Allan Green, T. G. and Craig S Cary} } @article {4373, title = {The hydroecology of an ephemeral wetland in the McMurdo Dry Valleys, Antarctica}, journal = {Journal of Geophysical Research: Biogeosciences}, year = {2019}, month = {11/2019}, abstract = {

The McMurdo Dry Valleys (MDV) is a polar desert on the coast of East Antarctica where ephemeral wetlands become hydrologically active during warm and sunny summers when sub-surface flows are generated from melting snowfields. To understand the structure and function of polar wetland ecosystems, we investigated the hydroecology of one such wetland, the Wormherder Creek wetland, during the warm and sunny summer of 2008 \– 2009, when the wetland was hydrologically reactivated. Conservative tracer (LiCl) was injected for a 2-hour period into a stream above the wetland to determine flow path orientations and hydrologic residence times. Tracer results indicated that surface water is rapidly exchanged with wetland groundwater and wetland residence times may exceed two austral summers. Major ion concentrations were uniform in samples from surface water and shallow groundwater throughout the wetland. Microbial mats in the wetland had high autotrophic index values (the ratios of chlorophyll a [Chl-a]/ash-free dry mass [AFDM]), ranging from 9-38 μg Chl-a/mg AFDM, indicative of actively photosynthesizing mat communities. The diatom communities in the mats were relatively uniform compared to those in mats from regularly flowing MDV streams, with four endemic and one widespread diatom taxa of the genus Luticola accounting for an average of 86\% of the community. These results indicate that the hydrologic characteristics of the wetland contribute to uniform geochemical conditions. In turn, uniform geochemical conditions may explain the high autotrophic index values of the microbial mats and relatively low spatial variation of the diatom community.

}, keywords = {LTER-MCM, Antarctica, desert hydrology, diatom biodiversity, hyporheic interactions, wetlands}, doi = {10.1029/2019JG005153}, url = {https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2019JG005153}, author = {Wlostowski, Adam and Schulte, Nicholas O. and Byron Adams and Ball, Becky and Rhea M.M. Esposito and Michael N. Gooseff and W. Berry Lyons and Uffe N. Nielsen and Ross A. Virginia and Diana H. Wall and Kathleen A. Welch and Diane M. McKnight} } @article {4164, title = {Nematodes in a polar desert reveal the relative role of biotic interactions in the coexistence of soil animals}, journal = {Communications Biology}, volume = {2}, year = {2019}, month = {02/2019}, abstract = {

Abiotic factors are major determinants of soil animal distributions and their dominant role is pronounced in extreme ecosystems, with biotic interactions seemingly playing a minor role. We modelled co-occurrence and distribution of the three nematode species that dominate the soil food web of the McMurdo Dry Valleys (Antarctica). Abiotic factors, other biotic groups, and autocorrelation all contributed to structuring nematode species distributions. However, after removing their effects, we found that the presence of the most abundant nematode species greatly, and negatively, affected the probability of detecting one of the other two species. We observed similar patterns in relative abundances for two out of three pairs of species. Harsh abiotic conditions alone are insufficient to explain contemporary nematode distributions whereas the role of negative biotic interactions has been largely underestimated in soil. The future challenge is to understand how the effects of global change on biotic interactions will alter species coexistence.

}, keywords = {LTER-MCM}, doi = {10.1038/s42003-018-0260-y}, url = {http://www.nature.com/articles/s42003-018-0260-y}, author = {Caruso, Tancredi and Hogg, Ian D. and Uffe N. Nielsen and Bottos, Eric M. and Charles K. Lee and D. W. Hopkins and Craig S Cary and John E. Barrett and Green, T. G. Allan and Storey, Bryan C. and Diana H. Wall and Byron Adams} } @article {4360, title = {Provisional checklist of terrestrial heterotrophic protists from Antarctica}, journal = {Antarctic Science}, year = {2019}, month = {11/2019}, abstract = {

Heterotrophic soil protists encompass lineages that are both evolutionarily ancient and highly diverse, providing an untapped wealth of scientific insight. Yet the diversity of free-living heterotrophic terrestrial protists is still largely unknown. To contribute to our understanding of this diversity, we present a checklist of heterotrophic protists currently reported from terrestrial Antarctica, for which no comprehensive evaluation currently exists. As a polar continent, Antarctica is especially susceptible to rising temperatures caused by anthropogenic climate change. Establishing a baseline for future conservation efforts of Antarctic protists is therefore important. We performed a literature search and found 236 taxa identified to species and an additional 303 taxa identified to higher taxonomic levels in 54 studies spanning over 100 years of research. Isolated by distance, climate and the circumpolar vortex, Antarctica is the most extreme continent on Earth: it is not unreasonable to think that it may host physiologically and evolutionarily unique species of protists, yet currently most species discovered in Antarctica are considered cosmopolitan. Additional sampling of the more extreme intra-continental zones will probably result in the discovery of more novel and unique taxa.

}, keywords = {LTER-MCM}, doi = {10.1017/S0954102019000361}, url = {https://www.cambridge.org/core/journals/antarctic-science/article/provisional-checklist-of-terrestrial-heterotrophic-protists-from-antarctica/DC08D89ABDC5AF2CC83E38B1C6F1F78C}, author = {Thompson, Andrew R. and Powell, Gareth S. and Byron Adams} } @article {4295, title = {Soil nematode abundance and functional group composition at a global scale}, journal = {Nature}, volume = {572}, year = {2019}, month = {08/2019}, abstract = {

Soil organisms are a crucial part of the terrestrial biosphere. Despite their importance for ecosystem functioning, few quantitative, spatially explicit models of the active belowground community currently exist. In particular, nematodes are the most abundant animals on Earth, filling all trophic levels in the soil food web. Here we use 6,759 georeferenced samples to generate a mechanistic understanding of the patterns of the global abundance of nematodes in the soil and the composition of their functional groups. The resulting maps show that 4.4 \± 0.64 \× 1020 nematodes (with a total biomass of approximately 0.3 gigatonnes) inhabit surface soils across the world, with higher abundances in sub-Arctic regions (38\% of total) than in temperate (24\%) or tropical (21\%) regions. Regional variations in these global trends also provide insights into local patterns of soil fertility and functioning. These high-resolution models provide the first steps towards representing soil ecological processes in global biogeochemical models and will enable the prediction of elemental cycling under current and future climate scenarios.

}, keywords = {LTER-MCM}, doi = {10.1038/s41586-019-1418-6}, url = {https://www.nature.com/articles/s41586-019-1418-6}, author = {van den Hoogen, Johan and Geisen, Stefan and Routh, Devin and Ferris, Howard and Traunspurger, Walter and Wardle, D and de Goede, Ron G. M. and Byron Adams and Ahmad, Wasim and Andriuzzi, Walter S. and Richard D. Bardgett and Bonkowski, Michael and Campos-Herrera, Raquel and Cares, Juvenil E. and Caruso, Tancredi and de Brito Caixeta, Larissa and Chen, Xiaoyun and Costa, Sofia R. and Creamer, Rachel and Mauro da Cunha Castro, Jos{\'e} and Dam, Marie and Djigal, Djibril and Escuer, Miguel and Griffiths, Bryan S. and Guti{\'e}rrez, Carmen and Hohberg, Karin and Kalinkina, Daria and Kardol, Paul and Kergunteuil, Alan and Korthals, Gerard and Krashevska, Valentyna and Kudrin, Alexey A. and Li, Qi and Liang, Wenju and Magilton, Matthew and Marais, Mariette and Mart{\'\i}n, Jos{\'e} Antonio Rodr{\'\i}guez and Matveeva, Elizaveta and Mayad, El Hassan and Mulder, Christian and Mullin, Peter and Neilson, Roy and Nguyen, T. A. Duong and Uffe N. Nielsen and Okada, Hiroaki and Rius, Juan Emilio Palomares and Pan, Kaiwen and Peneva, Vlada and Pellissier, Lo{\"\i}c and Carlos Pereira da Silva, Julio and Pitteloud, Camille and Powers, Thomas O. and Powers, Kirsten and Quist, Casper W. and Rasmann, Sergio and Moreno, Sara S{\'a}nchez and Scheu, Stefan and Set{\"a}l{\"a}, Heikki and Sushchuk, Anna and Tiunov, Alexei V. and Trap, Jean and van der Putten, W and Vesterg{\r a}rd, Mette and Villenave, Cecile and Waeyenberge, Lieven and Diana H. Wall and Wilschut, Rutger and Wright, Daniel G. and Yang, Jiue-in and Crowther, Thomas Ward} } @article {4156, title = {Aeolian material transport and its role in landscape connectivity in the McMurdo Dry Valleys, Antarctica}, journal = {Journal of Geophysical Research: Earth Surface}, volume = {123}, year = {2018}, month = {12/2018}, pages = {3323 - 3337}, abstract = {

Arid regions, particularly polar and alpine desert environments, have diminished landscape connectivity compared to temperate regions due to limited and/or seasonal hydrological processes. For these environments, aeolian processes play a particularly important role in landscape evolution and biotic community vitality through nutrient and solute additions. The McMurdo Dry Valleys (MDV) are the largest ice-free area in Antarctica and are potentially a major source of aeolian material for the continent. From this region, samples were collected at five heights (~5, 10, 20, 50, and 100 cm) above the surface seasonally for 2013 through 2015 from Alatna Valley, Victoria Valley, Miers Valley, and Taylor Valley (Taylor Glacier, East Lake Bonney, F6 (Lake Fryxell), and Explorer\’s Cove). Despite significant geological separation and varying glacial histories, low-elevation and coastal sites had similar major ion chemistries, as did high-elevation and inland locations. This locational clustering of compositions was also evident in scanning electron microscopy images and principal component analyses, particularly for samples collected at ~100 cm above the surface. Compared to published soil literature, aeolian material in Taylor Valley demonstrates a primarily down-valley transport of material toward the coast. Soluble N:P ratios in the aeolian material reflect relative nutrient enrichments seen in MDV soils and lakes, where younger, coastal soils are relatively N depleted, while older, up-valley soils are relatively P depleted. The aeolian transport of materials, including water-soluble nutrients, is an important vector of connectivity within the MDV and provides a mechanism to help \“homogenize\” the geochemistry of both soil and aquatic ecosystems.

}, keywords = {LTER-MCM}, doi = {10.1029/2017JF004589}, url = {https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2017JF004589}, author = {Melisa A. Diaz and Byron Adams and Kathleen A. Welch and Sue Welch and Opiyo, Stephen O. and Khan, Alia L. and Diane M. McKnight and Craig S Cary and W. Berry Lyons} } @phdthesis {4363, title = {Genomics and transcriptomics of Antarctic nematodes reveal drivers of life history evolution and genome evolution}, volume = {Ph.D.}, year = {2018}, school = {Brigham Young University}, type = {doctoral}, address = {Provo, UT}, abstract = {

Elemental stoichiometry defines a critical understanding of the relationship between\ nutrient availability and usage throughout different levels of the biological community. We\ found there is a link between available phosphorus (P), cellular phosphorus, and nematode development as postulated by the growth rate hypothesis (GRH). I predicted that in a P-poor environment, cellular RNA concentrations would be lower than they are in P-rich environment, and thus the 18srRNA expression level will have reduced. To most efficiently regulate the\ uptake of limited P, I predicted that nematodes in P-poor environments would decrease the number of copies of the 18s rRNA gene in their genome. I measured life history traits as well as rRNA gene expression and gene copy number. We found that elemental stoichiometry predicts evolutionary changes consistent with the Growth Rate Hypothesis. We sequenced and assembled a draft genome of P. murrayi. Although we expected to find genes responsible for stress tolerance, we hypothesized that in response to strong selection pressure associated with living in\ a simplified ecosystem, over time the genome of P. murrayi should have undergone significant decay (gene loss) relative to species in ecosystems structured more strongly by biotic interactions. We found significantly fewer genes in P. murrayi. To compare patterns of gene expression between two highly divergent Antarctic nematode species, we sequenced and assembled the transcriptomes of S. lindsayae and P. murrayi. Under laboratory conditions at 4\  ̊C, S. lindsayae had significantly lower rates of gene expression but expressed a significantly larger number of genes. We speculate that the differences in gene expression are correlated with life history traits (developmental rates) while the differences in the number of genes expressed can be explained\ by their different genetic systems (S. lindsayae is amphimictic, P. murrayi is parthenogenic) and the soil environments to which they are adapted. Since we previously showed that differences in available P content can influence the evolution of gene expression via gene copy number, and that this ultimately influences growth rate, we wondered how much of this response is driven by genetics versus how strongly these patterns are driven by temperature. To better understand this, we maintained wild type populations of P. murrayi in P-rich and P-poor conditions at 5\  ̊C, 10\  ̊C and 15 ̊C in the laboratory for over 40 generations and sequenced the transcriptomes prepared from each treatment group. We found that nutrient levels played an important role in gene expression when the temperature is optimal for P. murrayi culturing and that temperature is more important in gene expression when the available P is limited. This work underscores the utility of using principles of elemental stoichiometry coupled with genomic and transcriptomics research tools to make and test predictions about life history evolution. The results of my work also\ inform inferences about the ways in which nutrient availability also drives the organization of trophic interactions and ultimately ecosystems.

}, keywords = {LTER-MCM, Antarctic nematodes, Caenorhabditis elegans, genome evolution, growth rate hypothesis, Plectus murrayi, Scottnema lindsayae, transcriptome}, url = {https://search.proquest.com/docview/2081899003}, author = {Xue, Xia and Byron Adams} } @article {4060, title = {Observed trends of soil fauna in the Antarctic Dry Valleys: early signs of shifts predicted under climate change}, journal = {Ecology}, volume = {99}, year = {2018}, month = {02/2018}, pages = {312 - 321}, abstract = {

Long-term observations of ecological communities are necessary for generating and testing predictions of ecosystem responses to climate change. We investigated temporal trends and spatial patterns of soil fauna along similar environmental gradients in three sites of the McMurdo Dry Valleys, Antarctica, spanning two distinct climatic phases: a decadal cool- ing trend from the early 1990s through the austral summer of February 2001, followed by a shift to the current trend of warming summers and more frequent discrete warming events. After February 2001, we observed a decline in the dominant species (the nematode Scottnema lindsayae) and increased abundance and expanded distribution of less common taxa (rotifers, tardigrades, and other nematode species). Such diverging responses have resulted in slightly greater evenness and spatial homogeneity of taxa. However, total abundance of soil fauna appears to be declining, as positive trends of the less common species so far have not compen- sated for the declining numbers of the dominant species. Interannual variation in the propor- tion of juveniles in the dominant species was consistent across sites, whereas trends in abundance varied more. Structural equation modeling supports the hypothesis that the observed biological trends arose from dissimilar responses by dominant and less common spe- cies to pulses of water availability resulting from enhanced ice melt. No direct effects of mean summer temperature were found, but there is evidence of indirect effects via its weak but signif- icant positive relationship with soil moisture. Our findings show that combining an under- standing of species responses to environmental change with long-term observations in the field can provide a context for validating and refining predictions of ecological trends in the abun- dance and diversity of soil fauna.\ 

}, keywords = {LTER-MCM}, doi = {10.1002/ecy.2090}, url = {http://doi.wiley.com/10.1002/ecy.2090/full}, author = {Andriuzzi, Walter S. and Byron Adams and John E. Barrett and Ross A. Virginia and Diana H. Wall} } @article {4080, title = {Soil biological responses to C, N and P fertilization in a polar desert of Antarctica}, journal = {Soil Biology and Biochemistry}, volume = {122}, year = {2018}, month = {07/2018}, chapter = {7}, abstract = {

In the polar desert ecosystem of the McMurdo Dry Valleys of Antarctica, biology is constrained by available liquid water, low temperatures, as well as the availability of organic matter and nutrient elements. These soil ecosystems are climate-sensitive, where projected future warming may have profound effects on biological communities and biogeochemical cycling. Warmer temperatures will mobilize meltwater from permafrost and glaciers, may increase precipitation and may be accompanied by pulses of nutrient availability. Enhanced water and nutrient availability have the potential to greatly influence desert soil biology and ecosystem processes. The objectives of this 5-year study were to determine which nutrient elements (C, N, P) are most limiting to dry valley soil communities and whether landscape history (i.e.,\ in situ\ soil type and stoichiometry) influences soil community response to nutrient additions. After 3 years of no noticeable response, soil CO2\ flux was significantly higher under addition of C+ N than the other treatments, regardless of\ in situ\ soil stoichiometry, but microbial biomass and invertebrate abundance were variable and not influenced in the same manner. A stable isotope incubation suggests that fertilization increases C and N mineralization from organic matter via stimulating microbial activity, with loss of both the applied treatments as well\ in situ\ C and N. However, these responses are relatively short-lived, suggesting long-term impacts on C and N cycling would only occur if meltwater and nutrient pulses are sustained over time, a scenario that is increasingly likely for the dry valleys.

}, keywords = {LTER-MCM}, issn = {00380717}, doi = {10.1016/j.soilbio.2018.03.025}, url = {http://linkinghub.elsevier.com/retrieve/pii/S0038071718301081}, author = {Ball, Becky and Byron Adams and John E. Barrett and Diana H. Wall and Ross A. Virginia} } @article {4058, title = {Soil Moisture Controls the Thermal Habitat of Active Layer Soils in the McMurdo Dry Valleys, Antarctica}, journal = {Journal of Geophysical Research: Biogeosciences}, volume = {123}, year = {2018}, month = {01/2018}, chapter = {46-59}, abstract = {

Antarctic soil ecosystems are strongly controlled by abiotic habitat variables. Regional climate change in the McMurdo Dry Valleys is expected to cause warming over the next century, leading to an increase in frequency of freeze-thaw cycling in the soil habitat. Previous studies show that physiological stress associated with freeze-thaw cycling adversely affects invertebrate populations by decreasing abundance and positively selecting for larger body sizes. However, it remains unclear whether or not climate warming will indeed enhance the frequency of annual freeze-thaw cycling and associated physiological stresses. This research quantifies the frequency, rate, and spatial heterogeneity of active layer freezing to better understand how regional climate change may affect active layer soil thermodynamics, and, in turn, affect soil macroinvertebrate communities. Shallow active layer temperature, specific conductance, and soil moisture were observed along natural wetness gradients. Field observations show that the frequency and rate of freeze events are nonlinearly related to freezable soil moisture (θf). Over a 2 year period, soils at θf \< 0.080 m3/m3 experienced between 15 and 35 freeze events and froze rapidly compared to soils with θf \> 0.080 m3/m3, which experienced between 2 and 6 freeze events and froze more gradually. A numerical soil thermodynamic model is able to simulate observed freezing rates across a range of θf, reinforcing a well-known causal relationship between soil moisture and active layer freezing dynamics. Findings show that slight increases in soil moisture can potentially offset the effect of climate warming on exacerbating soil freeze-thaw cycling.

}, keywords = {LTER-MCM}, doi = {10.1002/2017JG004018}, url = {https://agupubs.onlinelibrary.wiley.com/doi/full/10.1002/2017JG004018}, author = {Wlostowski, Adam and Michael N. Gooseff and Byron Adams} } @article {4107, title = {Spatial and temporal patterns of microbial mats and associated invertebrates along an Antarctic stream}, journal = {Polar Biology}, volume = {41}, year = {2018}, month = {10/2018}, pages = {1911{\textendash}1921}, abstract = {

Microbial biofilms are biological hotspots in many alpine and polar ecosystems, but the controls on and functional significance of their fauna are little known. We studied cyanobacterial mats and the underlying sediment in a glacial meltwater stream in the McMurdo Dry Valleys, Antarctica. We investigated mat biomass (total and phototrophic), diatoms, and micro-meiofauna (nematodes, rotifers, and tardigrades) at nine sites along a 1670 m stream reach in a cold, low-flow growing season, and in a warmer growing season in which peak flows (above 100 L s\−1) scoured the mats. Diatom and invertebrate communities were not related, but mat biomass in the low-flow year was negatively related to nematode abundance, including that of the omnivore\ Eudorylaimus. In the high-flow year that followed, invertebrate abundance was reduced in the mats, diatom community structure was altered, and mat biomass was higher. The difference in invertebrate abundance between years was greater in mats in upstream reaches, where the greatest increases in flow velocity may have occurred, and was negligible in mats in downstream reaches as well as in the sediment beneath the mats. Integrating our results with previous findings, we generate two predictive hypotheses to be tested in glacial meltwater streams: (1) under peak flows invertebrates decline in the microbial mats, while (2) the sediment beneath the mats is a refuge from the flow disturbance. Our results also suggest that, under stable flow conditions, microinvertebrate grazers could exert top-down control on microbial mat biomass.

}, keywords = {LTER-MCM, diatoms, Disturbance, Dry valleys, Epilithon, Microfauna, Stream flow}, doi = {10.1007/s00300-018-2331-4}, url = {http://link.springer.com/10.1007/s00300-018-2331-4}, author = {Andriuzzi, Walter S. and Lee F. Stanish and Breana L. Simmons and Chris Jaros and Byron Adams and Diana H. Wall and Diane M. McKnight} } @article {4059, title = {Stable C and N isotope ratios reveal soil food web structure and identify the nematode Eudorylaimus antarcticus as an omnivore{\textendash}predator in~Taylor Valley, Antarctica}, journal = {Polar Biology}, volume = {41}, year = {2018}, month = {05/2018}, pages = {1013{\textendash}1018}, abstract = {

Soil food webs of the McMurdo Dry Valleys, Antarctica are simple. These include primary trophic levels of mosses, algae, cyanobacteria, bacteria, archaea, and fungi, and their protozoan and metazoan consumers (including relatively few species of nematodes, tardigrades, rotifers, and microarthropods). These biota are patchily distributed across the landscape, with greatest faunal biodiversity associated with wet soil. Understanding trophic structure is critical to studies of biotic interactions and distribution; yet, McMurdo Dry Valley soil food web structure has been inferred from limited laboratory culturing and micro- scopic observations. To address this, we measured stable isotope natural abundance ratios of C (13C/12C) and N (15N/14N) for di erent metazoan taxa (using whole body biomass) to determine soil food web structure in Taylor Valley, Antarctica. Nitrogen isotopes were most useful in di erentiating trophic levels because they fractionated predictably at higher trophic levels. Using 15N/14N, we found that three trophic levels were present in wet soil habitats. While cyanobacterial mats were the primary trophic level, the nematode Plectus murrayi, tardigrade Acutuncus antarcticus, and rotifers composed a secondary trophic level of grazers. Eudorylaimus antarcticus had a 15N/14N ratio that was 2\–4\‰ higher than that of grazers, indicating that this species is the sole member of a tertiary trophic level. Understanding the trophic positions of soil fauna is critical to predictions of current and future species interactions and their distributions for the McMurdo Dry Valleys, Antarctica.

}, keywords = {LTER-MCM}, doi = {10.1007/s00300-017-2243-8}, url = {http://link.springer.com/10.1007/s00300-017-2243-8}, author = {Shaw, E. Ashley and Byron Adams and John E. Barrett and W. Berry Lyons and Ross A. Virginia and Diana H. Wall} } @article {4139, title = {Stoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages}, journal = {Frontiers in Microbiology}, volume = {9}, year = {2018}, month = {07/2018}, abstract = {

Imbalances in C:N:P supply ratios may cause bacterial resource limitations and constrain biogeochemical processes, but the importance of shifts in soil stoichiometry are complicated by the nearly limitless interactions between an immensely rich species pool and a multiple chemical resource forms. To more clearly identify the impact of soil C:N:P on bacteria, we evaluated the cumulative effects of single and coupled long-term nutrient additions (i.e., C as mannitol, N as equal concentrations NH4 + and NO3 \− , and P as Na3PO4) and water on communities in an Antarctic polar desert, Taylor Valley. Untreated soils possessed relatively low bacterial diversity, simplified organic C sources due to the absence of plants, limited inorganic N, and excess soil P potentially attenuating links between C:N:P. After 6 years of adding resources, an alleviation of C and N colimitation allowed one rare Micrococcaceae, an Arthrobacter species, to dominate, comprising 47\% of the total community abundance and elevating soil respiration by 136\% relative to untreated soils. The addition of N alone reduced C:N ratios, elevated bacterial richness and diversity, and allowed rare taxa relying on ammonium and nitrite for metabolism to become more abundant [e.g., nitrite oxidizing Nitrospira species (Nitrosomonadaceae), denitrifiers utilizing nitrite (Gemmatimonadaceae) and members of Rhodobacteraceae with a high affinity for ammonium]. Based on community co-occurrence networks, lower C:P ratios in soils following P and CP additions created more diffuse and less connected communities by disrupting 73\% of species interactions and selecting for taxa potentially exploiting abundant P. Unlike amended nutrients, water additions alone elicited no lasting impact on communities. Our results suggest that as soils become nutrient rich a wide array of outcomes are possible from species dominance and the deconstruction of species interconnectedness to the maintenance of biodiversity.

}, keywords = {LTER-MCM, ecological stoichiometry, Lake Fryxell Basin, McMurdo Dry Valleys, network community modeling, nutrient colimitation, Solirubrobacteriaceae}, doi = {10.3389/fmicb.2018.01401}, url = {https://www.frontiersin.org/article/10.3389/fmicb.2018.01401/full}, author = {Aanderud, Zachary T. and Saurey, Sabrina D. and Ball, Becky and Diana H. Wall and John E. Barrett and Muscarella, Mario E. and Griffin, Natasha A. and Ross A. Virginia and Byron Adams} } @article {4022, title = {Decadal ecosystem response to an anomalous melt season in a polar desert in Antarctica}, journal = {Nature Ecology \& Evolution}, volume = {1}, year = {2017}, month = {09/2017}, pages = {1334-1338}, keywords = {LTER-MCM}, doi = {10.1038/s41559-017-0253-0}, url = {https://www.nature.com/articles/s41559-017-0253-0}, author = {Michael N. Gooseff and John E. Barrett and Byron Adams and Peter T. Doran and Andrew G Fountain and W. Berry Lyons and Diane M. McKnight and John C. Priscu and Eric R. Sokol and Cristina D. Takacs-Vesbach and Martijn L. Vandegehuchte and Ross A. Virginia and Diana H. Wall} } @article {4024, title = {Decoupled responses of soil bacteria and their invertebrate consumer to warming, but not freeze-thaw cycles, in the Antarctic Dry Valleys}, journal = {Ecology Letters}, volume = {20}, year = {2017}, month = {10/2017}, pages = {1242-1249}, abstract = {

Altered temperature profiles resulting in increased warming and freeze\–thaw cycle (FTC) frequency pose great ecological challenges to organisms in alpine and polar ecosystems. We performed a laboratory microcosm experiment to investigate how temperature variability affects soil bacterial cell numbers, and abundance and traits of soil microfauna (the microbivorous nematode Scottnema lindsayae) from McMurdo Dry Valleys, Antarctica. FTCs and constant freezing shifted nematode body size distribution towards large individuals, driven by higher mortality among smaller individuals. FTCs reduced both bacterial and nematode abundance, but bacterial cell numbers also declined under warming, demonstrating decoupled consumer\–prey responses. We predict that higher occurrence of FTCs in cold ecosystems will select for large body size within soil microinvertebrates and overall reduce their abundance. In contrast, warm temperatures without FTCs could lead to divergent responses in soil bacteria and their microinvertebrate consumers, potentially affecting energy and nutrient transfer rates in soil food webs of cold ecosystems.

}, keywords = {LTER-MCM}, doi = {10.1111/ele.12819}, url = {http://onlinelibrary.wiley.com/doi/10.1111/ele.12819/full}, author = {Matthew Knox and Andriuzzi, Walter S. and Heather N. Buelow and Cristina D. Takacs-Vesbach and Byron Adams and Diana H. Wall} } @article {3713, title = {Aerobiology Over Antarctica {\textendash} A New Initiative for Atmospheric Ecology}, journal = {Frontiers in Microbiology}, volume = {776796194610314927235011365134445142846479110123936574}, year = {2016}, month = {02/2016}, keywords = {LTER-MCM}, doi = {10.3389/fmicb.2016.00016}, url = {http://journal.frontiersin.org/Article/10.3389/fmicb.2016.00016/abstract}, author = {Pearce, David A. and Alekhina, Irina A. and Terauds, Aleks and Wilmotte, Annick and Quesada, Antonio and Edwards, Arwyn and Dommergue, Aurelien and Sattler, Birgit and Byron Adams and Magalhaes, Catarina and Chu, Wan-Loy and Lau, Maggie C. Y. and Craig S Cary and Smith, David J. and Diana H. Wall and Eguren, Gabriela and Matcher, Gwynneth and Bradley, James A. and de Vera, Jean-Pierre and Elster, Josef and Hughes, Kevin A. and Cuthbertson, Lewis and Benning, Liane G. and Gunde-Cimerman, Nina and Convey, Peter and Hong, Soon Gyu and Pointing, Steve B. and Pellizari, Vivian H. and Vincent, Warwick F.} } @article {4014, title = {Genetic diversity among populations of Antarctic springtails (Collembola) within the Mackay Glacier ecotone 1}, journal = {Genome}, volume = {59}, year = {2016}, month = {Jan-09-2016}, pages = {762 - 770}, keywords = {LTER-MCM}, issn = {0831-2796}, doi = {10.1139/gen-2015-0194}, url = {http://www.nrcresearchpress.com/doi/10.1139/gen-2015-0194}, author = {Clare R. Beet and Hogg, Ian D. and Gemma E. Collins and Cowan, Don A. and Diana H. Wall and Byron Adams and John-James Wilson} } @article {4015, title = {High levels of intraspecific genetic divergences revealed for Antarctic springtails: evidence for small-scale isolation during Pleistocene glaciation}, journal = {Biological Journal of the Linnean Society}, volume = {119}, year = {2016}, month = {Jan-09-2016}, pages = {166 - 178}, keywords = {LTER-MCM}, doi = {10.1111/bij.12796}, url = {https://academic.oup.com/biolinnean/article-lookup/doi/10.1111/bij.12796https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111\%2Fbij.12796}, author = {Bennett, Kristi R. and Hogg, Ian D. and Byron Adams and Hebert, Paul D. N.} } @article {4102, title = {The Impact of a Large-Scale Climate Event on Antarctic Ecosystem Processes}, journal = {BioScience}, volume = {66}, year = {2016}, month = {10/2016}, pages = {848 - 863}, abstract = {

Extreme climate and weather events, such as a drought, hurricanes, or ice storms, can strongly imprint ecosystem processing and may alter ecosystem structure. Ecosystems in extreme environments are particularly vulnerable because of their adaptation to severe limitations in energy, water, or nutrients. The vulnerability can be expressed as a relatively long-lasting ecosystem response to a small or brief change in environmental conditions. Such an event occurred in Antarctica and affected two vastly different ecosystems: a marine-dominated coastal system and a terrestrial polar desert. Both sites experienced winds that warmed air temperatures above the 0\°C threshold, resulting in extensive snow and ice melt and triggering a series of cascading effects through the ecosystems that are continuing to play out more than a decade later. This highlights the sensitivity of Antarctic ecosystems to warming events, which should occur more frequently in the future with global climate warming.

}, keywords = {LTER-MCM}, issn = {0006-3568}, doi = {10.1093/biosci/biw110}, url = {http://academic.oup.com/bioscience/article-pdf/66/10/848/7510601/biw110.pdf}, author = {Andrew G Fountain and Saba, Grace and Byron Adams and Peter T. Doran and Fraser, William and Michael N. Gooseff and Maciek K. Obryk and John C. Priscu and Sharon E. Stammerjohn and Ross A. Virginia} } @article {4025, title = {Impact of diurnal freeze{\textendash}thaw cycles on the soil nematode Scottnema lindsayae in Taylor Valley, Antarctica}, journal = {Polar Biology}, volume = {39}, year = {2016}, month = {04/2016}, pages = {583 - 592}, keywords = {LTER-MCM}, issn = {0722-4060}, doi = {10.1007/s00300-015-1809-6}, url = {https://link.springer.com/article/10.1007/s00300-015-1809-6}, author = {Matthew Knox and Diana H. Wall and Ross A. Virginia and Martijn L. Vandegehuchte and Inigo San Gil and Byron Adams} } @article {3716, title = {Mitochondrial DNA analyses reveal widespread tardigrade diversity in Antarctica}, journal = {Invertebrate Systematics}, volume = {29}, year = {2015}, month = {12/2015}, pages = {578}, keywords = {LTER-MCM}, issn = {1445-5226}, doi = {10.1071/IS14019}, url = {http://www.publish.csiro.au/?paper=IS14019}, author = {Velasco-Castrillon, Alejandro and McInnes, Sandra J. and Schultz, Mark B. and Arroniz-Crespo, Maria and D{\textquoteright}Haese, Cyrille A. and Gibson, John A. E. and Byron Adams and Page, Timothy J. and Austin, Andrew D. and Cooper, Steven J. B. and Stevens, Mark I.} } @article {3218, title = {Ecological Biogeography of the Terrestrial Nematodes~of Victoria Land, Antarctica}, journal = {ZooKeys}, volume = {419}, year = {2014}, month = {06/2015}, pages = {29 - 71}, keywords = {LTER-MCM}, issn = {1313-2989}, doi = {10.3897/zookeys.419.7180}, url = {http://zookeys.pensoft.net/articles.php?id=3899}, author = {Byron Adams and Diana H. Wall and Ross A. Virginia and Broos, Emma and Matthew Knox} } @article {3217, title = {Antarctic Thresholds - Ecosystem Resilience and Adaptation (AnT-ERA), a new SCAR-biology programme}, journal = {Polarforschung}, volume = {82}, year = {2013}, month = {10/2013}, pages = {147-150.}, chapter = {147}, abstract = {

Stresses on Antarctic ecosystems result from environmental change, including extreme events, and from (other) human impacts. Consequently, Antarctic habitats are changing, some at a rapid pace while others are relatively stable. A cascade of responses from molecular through organismic to the community level are expected. The differences in biological complexity and evolutionary histories between both polar regions and the rest of the planet suggest that stresses on polar ecosystem function may have fundamentally different outcomes from those at lower latitudes. Polar ecosystem processes are therefore key to informing wider ecological debate about the nature of stability and potential changes across the biosphere. The main goal of AnT-ERA is to facilitate the science required to examine changes in biological processes in Antarctic and sub-Antarctic marine-, freshwater and terrestrial ecosystems. Tolerance limits, as well as thresholds, resistance and resilience to environmental change will be determined. AnT-ERA is classified into three overlapping themes, which represent three levels of biological organisation: (1) molecular and physiological performance, (2) population processes and species traits, (3) ecosystem function and services.

}, keywords = {LTER-MCM}, url = {http://epic.awi.de/34238/1/Polarforschung_82-2_147-150.pdf}, author = {Gutt, J. and Byron Adams and T Bracegirdle and Cowan, D. and Vonda Cummings and di Prisco, G. and Gradinger, R. and Isla, E. and McIntyre, T. and Murphy, E and Lloyd S. Peck and I.R. Schloss and Smith, C. and Suckling, C. C. and Takahashi, A. and Diana H. Wall and J.C. Xavier} } @article {1075, title = {The Life Cycle of the Antarctic Nematode Plectus murrayi Under Laboratory Conditions.}, journal = {Journal of nematology}, volume = {45}, year = {2013}, month = {2013 Mar}, pages = {39-42}, keywords = {LTER-MCM}, url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3625130/}, author = {Cecilia M. Tomasel and Byron Adams and Fernando G. Tomasel and Diana H. Wall} } @article {1099, title = {Understanding Terrestrial Ecosystem Response to Antarctic Climate Change}, journal = {Eos, Transactions American Geophysical Union}, volume = {94}, year = {2013}, month = {01/2013}, pages = {33 - 33}, keywords = {LTER-MCM}, doi = {10.1002/2013EO030009}, url = {http://onlinelibrary.wiley.com/doi/10.1002/2013EO030009/abstract}, author = {Joseph S. Levy and W. Berry Lyons and Byron Adams} } @article {1105, title = {Antarctic Tardigrada: a first step in understanding molecular operational taxonomic units (MOTUs) and biogeography of cryptic meiofauna}, journal = {Invertebrate Systematics}, volume = {26}, year = {2012}, month = {12/2012}, pages = {526}, keywords = {LTER-MCM}, doi = {10.1071/IS12034}, author = {Czechowski, Paul and Sands, Chester J. and Byron Adams and D{\textquoteright}Haese, Cyrille A. and John A. E. Gibson and McInnes, Sandra J. and Stevens, Mark I.} } @article {1108, title = {Cross-biome metagenomic analyses of soil microbial communities and their functional attributes}, journal = {Proceedings Bational Academy of Sciences}, year = {2012}, month = {11/2012}, keywords = {LTER-MCM}, doi = {10.1073/pnas.1215210110}, url = {www.pnas.org/cgi/doi/10.1073/pnas.1215210110}, author = {Noah Fierer and Jonathan W. Leff and Byron Adams and Uffe N. Nielsen and Scott T. Bates and Christian L. Lauber and Sarah Owens and Jack A. Gilbert and Diana H. Wall and J. Gregory Caporaso} } @article {1122, title = {The ecology of pulse events: insights from an extreme climatic event in a polar desert ecosystem}, journal = {Ecosphere}, volume = {3}, year = {2012}, month = {02/2012}, pages = {art17}, keywords = {LTER-MCM}, doi = {10.1890/ES11-00325.1}, url = {http://www.esajournals.org/doi/abs/10.1890/ES11-00325.1}, author = {Uffe N. Nielsen and Diana H. Wall and Byron Adams and Ross A. Virginia and Ball, Becky and Michael N. Gooseff and Diane M. McKnight} } @article {1102, title = {Thawing permafrost alters nematode populations and soil habitat characteristics in an Antarctic polar desert ecosystem}, journal = {Pedobiologia}, volume = {55}, year = {2012}, month = {3/2012}, pages = {75 - 81}, keywords = {LTER-MCM}, doi = {10.1016/j.pedobi.2011.11.001}, url = {http://www.sciencedirect.com/science/article/pii/S0031405611001156}, author = {Smith, T.E. and Diana H. Wall and Hogg, I and Byron Adams and Uffe N. Nielsen and Ross A. Virginia} } @article {1132, title = {Antarctic nematode communities: observed and predicted responses to climate change}, journal = {Polar Biology}, volume = {34}, year = {2011}, month = {11/2011}, pages = {1701 - 1711}, keywords = {LTER-MCM}, doi = {10.1007/s00300-011-1021-2}, url = {http://www.springerlink.com/content/v588t5671p1w1323/}, author = {Uffe N. Nielsen and Diana H. Wall and Byron Adams and Ross A. Virginia} } @inbook {1144, title = {Molecular analysis of desiccation survival in Antarctic nematodes}, booktitle = {Molecular and Physiological Basis of Nematode Survival}, year = {2011}, pages = {205-232}, publisher = {CABI International}, organization = {CABI International}, address = {Wallingford}, keywords = {LTER-MCM}, isbn = {9781845936877}, author = {Bishwo N. Adhikari and Byron Adams} } @book {1145, title = {Molecular and physiological basis of nematode survival: Molecular analyses of desiccation survival in Antarctic nematodes.}, year = {2011}, pages = {205 - 232}, publisher = {CABI}, organization = {CABI}, address = {Wallingford}, keywords = {LTER-MCM}, doi = {10.1079/9781845936877.0205}, author = {Bishwo N. Adhikari and Byron Adams}, editor = {Perry, R. N. and Wharton, D. A.} } @article {1126, title = {Nematode communities of Byers Peninsula, Livingston Island, maritime Antarctica}, journal = {Antarctic Science}, volume = {23}, year = {2011}, month = {8/2011}, pages = {349 - 357}, keywords = {LTER-MCM}, doi = {10.1017/S0954102011000174}, author = {Uffe N. Nielsen and Diana H. Wall and Li, Grace and Toro, Manuel and Byron Adams and Ross A. Virginia} } @article {1155, title = {The Antarctic Nematode Plectus murrayi: An Emerging Model to Study Multiple Stress Survival}, journal = {Cold Spring Harbor Protocols}, volume = {2010}, year = {2010}, month = {11/2010}, pages = {pdb.emo142 - pdb.emo142}, keywords = {LTER-MCM}, doi = {10.1101/pdb.emo142}, author = {Bishwo N. Adhikari and Cecilia M. Tomasel and Li, G and Diana H. Wall and Byron Adams} } @article {1156, title = {Culturing the Antarctic Nematode Plectus murrayi}, journal = {Cold Spring Harbor Protocols}, volume = {2010}, year = {2010}, month = {11/2010}, pages = {pdb.prot5522 - pdb.prot5522}, keywords = {LTER-MCM}, doi = {10.1101/pdb.prot5522}, url = {http://cshprotocols.cshlp.org/content/2010/11/pdb.emo142.short}, author = {Bishwo N. Adhikari and Cecilia M. Tomasel and Li, G and Diana H. Wall and Byron Adams} } @article {1163, title = {Effect of slow desiccation and freezing on gene transcription and stress survival of an Antarctic nematode}, journal = {Journal of Experimental Biology}, volume = {213}, year = {2010}, month = {06/2010}, pages = {1803 - 1812}, keywords = {LTER-MCM}, doi = {10.1242/jeb.032268}, author = {Bishwo N. Adhikari and Diana H. Wall and Byron Adams} } @article {1147, title = {Experimentally increased snow accumulation alters soil moisture and animal community structure in a polar desert}, journal = {Polar Biology}, volume = {33}, year = {2010}, month = {7/2010}, pages = {897 - 907}, keywords = {LTER-MCM}, doi = {10.1007/s00300-010-0766-3}, author = {Edward Ayres and Johnson N. Nkem and Diana H. Wall and Byron Adams and John E. Barrett and Breana L. Simmons and Ross A. Virginia and Andrew G Fountain} } @phdthesis {4442, title = {Genomic analysis of nematode-environment interaction}, volume = {Ph.D.}, year = {2010}, month = {08/2010}, school = {Brigham Young University}, type = {doctoral}, address = {Provo, UT}, abstract = {

The natural environments of organisms present a multitude of biotic and abiotic challenges that require both short-term ecological and long-term evolutionary responses. Though most environmental response studies have focused on effects at the ecosystem, community and organismal levels, the ultimate controls of these responses are located in the genome of the organism. Soil nematodes are highly responsive to, and display a wide variety of responses to changing environmental conditions, making them ideal models for the study of organismal interactions with their environment. In an attempt to examine responses to environmental stress (desiccation and freezing), genomic level analyses of gene expression during anhydrobiosis of the Antarctic nematode Plectus murrayi was undertaken. An EST library representative of the desiccation induced transcripts was established and the transcripts differentially expressed during desiccation stress were identified. The expressed genome of P. murrayi showed that desiccation survival in nematodes involves differential expression of a suite of genes from diverse functional areas, and constitutive expression of a number of stress related genes. My study also revealed that exposure to slow desiccation and freezing plays an important role in the transcription of stress related genes, improves desiccation and freezing survival of nematodes. Deterioration of traits essential for biological control has been recognized in diverse biological control agents including insect pathogenic nematodes. I studied the genetic mechanisms behind such deterioration using expression profiling. My results showed that trait deterioration of insect pathogenic nematode induces substantial overall changes in the nematode transcriptome and exhibits a general pattern of metabolic shift causing massive changes in metabolic and other processes. Finally, through field observations and molecular laboratory experiments the validity of the growth rate hypothesis in natural populations of Antarctic nematodes was tested. My results indicated that elemental stoichiometry influences evolutionary adaptations in gene expression and genome evolution. My study, in addition to providing immediate insight into the mechanisms by which multicellular animals respond to their environment, is transformative in its potential to inform other fundamental ecological and evolutionary questions, such as the evolution of life-history patterns and the relationship between community structure and ecological function in ecosystems.

}, keywords = {LTER-MCM, anhydrobiosis, Antarctic nematode, comparative transcriptomics, complementary DNA library, desiccation, functional analysis, Heterorhabditis bacteriophora, McMurdo Dry Valleys, microarray analysis, Plectus murrayi, quantative real-time polymerase chain reaction, Scottnema lindsayae, stoichiometry, stress survival, subtractive hybridization, trait deterioration, transcriptional profiling}, url = {https://scholarsarchive.byu.edu/etd/2578}, author = {Bishwo N. Adhikari and Byron Adams} } @article {1152, title = {Latitudinal distribution and mitochondrial DNA (COI) variability of Stereotydeus spp. (Acari: Prostigmata) in Victoria Land and the central Transantarctic Mountains}, journal = {Antarctic Science}, volume = {22}, year = {2010}, month = {12/2010}, pages = {749 - 756}, keywords = {LTER-MCM}, doi = {10.1017/S0954102010000659}, author = {Demetras, Nicholas J. and Hogg, I and Banks, Jonathan C. and Byron Adams} } @article {1182, title = {Desiccation survival in an Antarctic nematode: molecular analysis using expressed sequenced tags.}, journal = {BMC GENOMICS}, volume = {10}, year = {2009}, month = {09/2009}, pages = {69}, keywords = {LTER-MCM}, doi = {10.1186/1471-2164-10-69}, url = {http://www.biomedcentral.com/1471-2164/10/69}, author = {Bishwo N. Adhikari and Diana H. Wall and Byron Adams} } @article {1180, title = {Environmental DNA sequencing primers for eutardigrades and bdelloid rotifers}, journal = {BMC Ecology}, volume = {9}, year = {2009}, month = {11/2009}, pages = {25}, keywords = {LTER-MCM}, doi = {10.1186/1472-6785-9-25}, author = {Robeson, Michael S and Costello, Elizabeth K and Freeman, Kristen R and Whiting, Jeremy and Byron Adams and Martin, Andrew P and Schmidt, Steve K} } @article {1190, title = {Long-term experimental warming reduces soil nematode populations in the McMurdo Dry Valleys, Antarctica}, journal = {Soil Biology \& Biochemistry}, volume = {41}, year = {2009}, pages = {2052-2060}, keywords = {LTER-MCM}, doi = {10.1016/j.soilbio.2009.07.009}, author = {Breana L. Simmons and Diana H. Wall and Byron Adams and Edward Ayres and John E. Barrett and Ross A. Virginia} } @article {1195, title = {Terrestrial mesofauna in above- and below-ground habitats: Taylor Valley, Antarctica}, journal = {Polar Biology}, volume = {32}, year = {2009}, pages = {1549-1558}, keywords = {LTER-MCM}, doi = {LTER}, author = {Breana L. Simmons and Diana H. Wall and Byron Adams and Edward Ayres and John E. Barrett and Ross A. Virginia} } @article {1183, title = {Where{\textquoteright}s the ecology in molecular ecology?}, journal = {Oikos}, volume = {118}, year = {2009}, month = {05/2009}, pages = {1601-1609}, keywords = {LTER-MCM}, doi = {10.1111/j.1600-0706.2009.17557.x}, author = {Jerry B. Johnson and Scott M. Peat and Byron Adams} } @article {1210, title = {Decline in a dominant invertebrate species contributes to altered carbon cycling in a low-diversity soil ecosystem}, journal = {Global Change Biology}, volume = {14}, year = {2008}, pages = {1734-1744}, keywords = {LTER-MCM}, doi = {LTER}, author = {John E. Barrett and Ross A. Virginia and Diana H. Wall and Byron Adams} } @article {1211, title = {Effects of Human Trampling on Populations of Soil Fauna in the McMurdo Dry Valleys, Antarctica.}, journal = {Conservation Biology}, volume = {22}, year = {2008}, month = {12/2008}, pages = {1544-1551}, abstract = {

Antarctic ecosystems are often considered nearly pristine because levels of anthropogenic disturbance are extremely low there. Nevertheless, over recent decades there has been a rapid increase in the number of people, researchers and tourists, visiting Antarctica. We evaluated, over 10 years, the direct impact of foot traffic on the abundance of soil animals and soil properties in Taylor Valley within the McMurdo Dry Valleys region of Antarctica. We compared soils from minimally disturbed areas with soils from nearby paths that received intermediate and high levels of human foot traffic (i.e., up to approximately 80 passes per year). The nematodes Scottnema lindsayae and Eudorylaimus sp. were the most commonly found animal species, whereas rotifers and tardigrades were found only occasionally. On the highly trampled footpaths, abundance of S. lindsayae and Eudorylaimus sp. was up to 52 and 76\% lower, respectively, than in untrampled areas. Moreover, reduction in S. lindsayae abundance was more pronounced after 10 years than 2 years and in the surface soil than in the deeper soil, presumably because of the longer period of disturbance and the greater level of physical disturbance experienced by the surface soil. The ratio of living to dead Eudorylaimus sp. also declined with increased trampling intensity, which is indicative of increased mortality or reduced fecundity. At one site there was evidence that high levels of trampling reduced soil CO2 fluxes, which is related to total biological activity in the soil. Our results show that even low levels of human traffic can significantly affect soil biota in this ecosystem and may alter ecosystem processes, such as carbon cycling. Consequently, management and conservation plans for Antarctic soils should consider the high sensitivity of soil fauna to physical disturbance as human presence in this ecosystem increases.

}, keywords = {LTER-MCM}, doi = {10.1111/j.1523-1739.2008.01034.x}, author = {Edward Ayres and Johnson N. Nkem and Diana H. Wall and Byron Adams and John E. Barrett and Broos, E and Andrew N. Parsons and Powers, Laura E. and Breana L. Simmons and Ross A. Virginia} } @article {1248, title = {The southernmost worm, Scottnema lindsayae (Nematoda): diversity, dispersal and ecological stability.}, journal = {Polar Biology}, volume = {30}, year = {2007}, pages = {809-815}, keywords = {LTER-MCM}, doi = {LTER}, author = {Byron Adams and Diana H. Wall and Gozel, U and Dillman, A and Chaston, J and Hogg, I} } @article {1252, title = {Unique similarity of faunal communities across aquatic terrestrial interfaces in a polar desert ecosystem}, journal = {Ecosystems}, year = {2007}, keywords = {LTER-MCM}, doi = {LTER}, author = {Edward Ayres and Diana H. Wall and Byron Adams and John E. Barrett and Ross A. Virginia} } @article {1263, title = {Biotic interactions in Antarctic terrestrial ecosystems: Are they a factor?}, journal = {Soil Biology and Biochemistry}, volume = {38}, year = {2006}, pages = {3035-3040}, keywords = {LTER-MCM}, doi = {10.1016/j.soilbio.2006.04.026}, url = {http://www.sciencedirect.com/science/article/pii/S0038071706002173}, author = {Hogg, I and Diana H. Wall and Craig S Cary and Convey, K and Newsham, K and ODonnell, G and Byron Adams and Aislabie, J and Francesco Frati and Stevens, M} } @article {1264, title = {Co-variation in soil biodiversity and biogeochemistry in Northern and Southern Victoria Land, Antarctica}, journal = {Antarctic Science}, volume = {18}, year = {2006}, pages = {535-548}, keywords = {LTER-MCM}, doi = {10.1017/S0954102006000587}, url = {https://www.cambridge.org/core/journals/antarctic-science/article/covariation-in-soil-biodiversity-and-biogeochemistry-in-northern-and-southern-victoria-land-antarctica/C3514C28DB75F3A19DB5F266D4B1B56E}, author = {John E. Barrett and Ross A. Virginia and Diana H. Wall and Craig S Cary and Byron Adams and Hacker, A and Aislabie, J} } @article {1265, title = {Diversity and distribution of Victoria Land biota}, journal = {Soil Biology and Biochemistry}, volume = {38}, year = {2006}, pages = {3003-3018}, keywords = {LTER-MCM}, doi = {10.1016/j.soilbio.2006.04.030}, url = {https://www.sciencedirect.com/science/article/abs/pii/S0038071706002215}, author = {Byron Adams and Connell, L and Peter Convey and Fell, J and Francesco Frati and Hogg, I and Newsham, K and O{\textquoteright}Donnell, A and Russell, N and Seppelt, R and Stevens, M and Richard D. Bardgett and Edward Ayres and Diana H. Wall and Aislabie, J and Bamforth, S and Bargagli, R and Craig S Cary and Cavacini, P} } @article {1277, title = {A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica}, journal = {Soil Biology and Biochemistry}, volume = {38}, year = {2006}, pages = {3001-3002}, keywords = {LTER-MCM}, doi = {LTER}, author = {Diana H. Wall and Byron Adams and John E. Barrett and D. W. Hopkins} } @article {1279, title = {Wind dispersal of soil invertebrates in the McMurdo Dry Valleys, Antarctica}, journal = {Polar Biology}, volume = {29}, year = {2006}, pages = {346-352}, abstract = {

Dispersal of soil organisms is crucial for their spatial distribution and adaptation to the prevailing conditions of the Antarctic Dry Valleys. This study investigated the possibility of wind dispersal of soil invertebrates within the dry valleys. Soil invertebrates were evaluated in (1) pockets of transported sediments to lake ice and glacier surfaces, (2) wind-transported dust particles in collection pans (Bundt pans) 100\ cm above the soil surface, and (3) sediments transported closer to the surface (\<50\ cm) and collected in open top chambers (OTCs). Invertebrates were extracted and identified. Nematodes were identified to species and classified according to life stage and sex. Three species of nematodes were recovered and\ Scottnema lindsayae\ was the most dominant. There were more juveniles (\∼71\%) in the transported sediments than adults (29\%). Tardigrades and rotifers were more abundant in sediments on lake and glacier surfaces while nematodes were more abundant in the dry sediment collections of Bundt pans and OTCs. The abundance of immobile (dead) nematodes in the Bundt pans and OTCs was three times greater than active (live) nematodes. Anhydrobiosis constitutes a survival mechanism that allows wind dispersal of nematodes in the McMurdo Dry Valleys. Our results show that soil invertebrates are dispersed by wind in the Dry Valleys and are viable in ice communities on lake surfaces and glaciers.

}, keywords = {LTER-MCM, Biggie}, doi = {10.1007/s00300-005-0061-x}, url = {http://link.springer.com/content/pdf/10.1007\%2Fs00300-005-0061-x}, author = {Johnson N. Nkem and Diana H. Wall and Ross A. Virginia and John E. Barrett and Broos, E and Porazinska, D and Byron Adams} }