02601nas a2200241   4500008004100000022001400041245005900055210005400114260001200168520187700180653001302057653001902070653001702089653001502106653003102121100001702152700002102169700002602190700002302216700003302239700001702272856007002289       2024                        eng d  a0030-129900aThe underground network: Facilitation in soil bacteria0 aunderground network Facilitation in soil bacteria  c06/20243 a<p>Our understanding of the fundamental role that soil bacteria play in the structure and functioning of Earth&#39;s ecosystems is ever expanding, but insight into the nature of interactions within these bacterial communities remains rudimentary. Bacterial facilitation may enhance the establishment, growth, and succession of eukaryotic biota, elevating the complexity and diversity of the entire soil community and thereby modulating multiple ecosystem functions. Global climate change often alters soil bacterial community composition, which, in turn, impacts other dependent biota. However, the impact of climate change on facilitation within bacterial communities remains poorly understood even though it may have important cascading consequences for entire ecosystems. The wealth of metagenomic data currently being generated gives community ecologists the ability to investigate bacterial facilitation in the natural world and how it affects ecological systems responses to climate change. Here, we review current evidence demonstrating the importance of facilitation in promoting emergent properties such as community diversity, ecosystem functioning, and resilience to climate change in soil bacterial communities. We show that a synthesis is currently missing between the abundant data, newly developed models and a coherent ecological framework that addresses these emergent properties. We highlight that including phylogenetic information, the physicochemical environment, and species-specific ecologies can improve our ability to infer interactions in natural soil communities. Following these recommendations, studies on bacterial facilitation will be an important piece of the puzzle to understand the consequences of global change on ecological communities and a model to advance our understanding of facilitation in complex communities more generally.</p>10abacteria10aclimate change10afacilitation10aresilience10astress-gradient hypothesis1 aJorna, Jesse1 aAdams, Byron, J.1 aAanderud, Zachary, T.1 aFrandsen, Paul, B.1 aTakacs-Vesbach, Cristina, D.1 aKéfi, Sonia  uhttps://nsojournals.onlinelibrary.wiley.com/doi/10.1111/oik.1029902380nas a2200253   4500008004100000245012200041210006900163260001200232300000900244490000600253520157500259653001501834653002701849653002401876653001901900653001601919653001901935653002701954100002501981700002902006700002602035700002102061856004402082       2021                        eng d00aPhagotrophic protists and their associates: Evidence for preferential grazing in an abiotically driven soil ecosystem0 aPhagotrophic protists and their associates Evidence for preferen  c08/2021  a15550 v93 a<p>The complex relationship between ecosystem function and soil food web structure is governed by species interactions, many of which remain unmapped. Phagotrophic protists structure soil food webs by grazing the microbiome, yet their involvement in intraguild competition, susceptibility to predator diversity, and grazing preferences are only vaguely known. These species-dependent interactions are contextualized by adjacent biotic and abiotic processes, and thus obfuscated by typically high soil biodiversity. Such questions may be investigated in the McMurdo Dry Valleys (MDV) of Antarctica because the physical environment strongly filters biodiversity and simplifies the influence of abiotic factors. To detect the potential interactions in the MDV, we analyzed the co-occurrence among shotgun metagenome sequences for associations suggestive of intraguild competition, predation, and preferential grazing. In order to control for confounding abiotic drivers, we tested co-occurrence patterns against various climatic and edaphic factors. Non-random co-occurrence between phagotrophic protists and other soil fauna was biotically driven, but we found no support for competition or predation. However, protists predominately associated with Proteobacteria and avoided Actinobacteria, suggesting grazing preferences were modulated by bacterial cell-wall structure and growth rate. Our study provides a critical starting-point for mapping protist interactions in native soils and highlights key trends for future targeted molecular and culture-based approaches.</p>10aAntarctica10aco-occurrence networks10aMcMurdo Dry Valleys10aRhogostoma sp.10aSandona sp.10asoil food webs10avariation partitioning1 aThompson, Andrew, R.1 aRoth-Monzón, Andrea, J.1 aAanderud, Zachary, T.1 aAdams, Byron, J.  uhttps://www.mdpi.com/2076-2607/9/8/155501901nas a2200169   4500008004100000245010500041210006900146260004900215490000900264520132500273653001301598653001201611653001301623100002401636700002601660856004501686       2018                        eng d00aMicrobial and CO2 responses to water stresses show decreased productivity and diversity through time0 aMicrobial and CO2 responses to water stresses show decreased pro  aProvo, UTbBrigham Young Universityc05/20180 vM.S.3 a<p>Some bacterial taxa when stimulated by water additions will break dormancy, grow, and become dominant members of the community and contribute significant pulses of&nbsp;CO<sub>2</sub> associated with the rewetting event. These pulses of activity are associated with high levels of bacterial productivity in soils. (Aanderud et al. 2011) We examined the bacterial taxa that resuscitate and become metabolically active following two forms of water stress (soil drying- rewetting and freeze-thaw cycles) and we captured and measured the CO<sub>2</sub> emanating from those soils. Specifically, We used target metagenomics, which uses a specific gene pool within bacteria that is associated with a function of an ecological process, in this case active (16S rRNA communities) bacteria and all bacteria (16S rRNA communities) during drying-rewetting and freeze-thaw cycles. We measured an array of community dynamics (i.e., evenness, richness, diversity, relative abundance of taxa, and network analyses between taxa) as dry soils are rewetted and as frozen soils thaw multiple times in three cold desert soils. Soils from all three locations exhibited some similar bacterial taxa and gene function but were large in part their own community derived from the evolutionary history of the continent in which they reside.</p>10adormancy10aPiCRUST10aturnover1 aRobinson, David, M.1 aAanderud, Zachary, T.  uhttps://scholarsarchive.byu.edu/etd/683002975nas a2200289   4500008004100000245013500041210006900176260001200245490000600257520199400263653002902257653002302286653002402309653003102333653002602364653002602390100002602416700002402442700001602466700002002482700002202502700002602524700002502550700002302575700001702598856007002615       2018                        eng d00aStoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages0 aStoichiometric Shifts in Soil CNP Promote Bacterial Taxa Dominan  c07/20180 v93 a<p>Imbalances in C:N:P supply ratios may cause bacterial resource limitations and constrain biogeochemical processes, but the importance of shifts in soil stoichiometry are complicated by the nearly limitless interactions between an immensely rich species pool and a multiple chemical resource forms. To more clearly identify the impact of soil C:N:P on bacteria, we evaluated the cumulative effects of single and coupled long-term nutrient additions (i.e., C as mannitol, N as equal concentrations NH4 + and NO3 &minus; , and P as Na3PO4) and water on communities in an Antarctic polar desert, Taylor Valley. Untreated soils possessed relatively low bacterial diversity, simplified organic C sources due to the absence of plants, limited inorganic N, and excess soil P potentially attenuating links between C:N:P. After 6 years of adding resources, an alleviation of C and N colimitation allowed one rare Micrococcaceae, an Arthrobacter species, to dominate, comprising 47% of the total community abundance and elevating soil respiration by 136% relative to untreated soils. The addition of N alone reduced C:N ratios, elevated bacterial richness and diversity, and allowed rare taxa relying on ammonium and nitrite for metabolism to become more abundant [e.g., nitrite oxidizing Nitrospira species (Nitrosomonadaceae), denitrifiers utilizing nitrite (Gemmatimonadaceae) and members of Rhodobacteraceae with a high affinity for ammonium]. Based on community co-occurrence networks, lower C:P ratios in soils following P and CP additions created more diffuse and less connected communities by disrupting 73% of species interactions and selecting for taxa potentially exploiting abundant P. Unlike amended nutrients, water additions alone elicited no lasting impact on communities. Our results suggest that as soils become nutrient rich a wide array of outcomes are possible from species dominance and the deconstruction of species interconnectedness to the maintenance of biodiversity.</p>10aecological stoichiometry10aLake Fryxell Basin10aMcMurdo Dry Valleys10anetwork community modeling10anutrient colimitation10aSolirubrobacteriaceae1 aAanderud, Zachary, T.1 aSaurey, Sabrina, D.1 aBall, Becky1 aWall, Diana, H.1 aBarrett, John, E.1 aMuscarella, Mario, E.1 aGriffin, Natasha, A.1 aVirginia, Ross, A.1 aAdams, Byron  uhttps://www.frontiersin.org/article/10.3389/fmicb.2018.01401/full05193nas a2200229   4500008004100000245009300041210006900134260004000203490000900243520447100252653002304723653001504746653001304761653002204774653000904796653001704805653002704822653002404849100002404873700002604897856004004923       2013                        eng d00aResource Legacies and Priming Regulate Microbial Communities in Antarctica's Dry Valleys0 aResource Legacies and Priming Regulate Microbial Communities in   aProvo, UTbBrigham Young University0 vM.S.3 a<p>Multiple mechanisms control bacterial community structure but two in particular, the &quot;legacy&quot; of past environmental conditions, and the &quot;priming&quot; of bacteria to respond to seasonal or reoccurring fluctuations in resources, have the potential to determine both bacterial communities, as well as, temporal shifts in active bacterial taxa. To begin to evaluate the legacy effects of resources on microbial communities, we added four limiting resources annually (i.e., water only; C-mannitol + water; N-NH4NO3 + water; and C, N + water) and measured shifts in bacterial community composition after seven years in a cold desert ecosystem in the McMurdo Dry Valleys, Antarctica. Further, to investigate the ecological significance of priming, we conducted a series of stable isotope probing experiments (i.e., 18O-DNA SIP with 18O-labeled water, 13C-DNA SIP with 13C-labeled mannitol, 15N-DNA with 15N- NH4NO3, and a combined C and N SIP) and characterized the responding (i.e., isotopically labeled) and seed bank (i.e., unlabeled) bacterial communities. We performed each of the SIPs in soil microcosms corresponding to a single resource manipulation (e.g., 13C-labeled mannitol in C addition soils). We hypothesized that all long-term additions of nutrients and water will lead to a distinct bacterial community&mdash;a legacy effect due to the nutrient and water impoverished state of Antarctica soils. We also hypothesized that the stronger the legacy effects demonstrated by a specific community the more adapted or primed bacterial species will be to take advantage of the resource and respond. As hypothesized, resource additions created distinct bacterial legacy but to different degrees among the treatments. The extent of the resource legacy effects was greatest in the CN, intermediate in water and N, and lowest in C communities relative to the control communities, suggesting that C induced changes in communities were intensified by tandem N additions and that water alone created a more distinct legacy than water and C additions combined. Contrary to our hypothesis, the stronger the legacy effects, the less adapted or primed the community was to take advantage of resource additions. For example, the CN treatment that induced the greatest effect on bacterial communities had the lowest number of species (20.9%) in common between the responding and seed bank communities. This inverse relationship may be due to only two species (i.e., Arthrobacter, Actinobacteria and Massilia, Betaproteobacteria) really being primed to take advantage of CN and these species constituting over 75% of the seed bank community. Water, N, and C additions had similar levels of priming with 38.4%, 41.4%, and 36.3% of the responding species being present in the seed bank community, respectively. But of these three treatments, only the priming with water resulted in a unique responding community, suggesting that water, a universal bacterial resource, was enough to prime bacteria. Furthermore, water generates the most diverse responding community of all the resources with stemming from all of the fourteen dominant phyla. We did find patterns of ecological coherence among the responders, especially in the major responders (i.e., responders that increased in relative recovery by at least ten-fold). These responders were predominantly found in only three phyla (i.e., Actinobacteria, Bacteriodetes, and Gammaproteobacteria) regardless of resource addition. Alternatively minor responders (i.e., responders that increased in relative recovery at least two-fold) were contained in fourteen different phyla with specific taxa stimulated by CN (i.e., Betaproteobacteria) and N and water (i.e., Deltaproteobacteria). Further, resource additions elicited responses from 37% of bacterial species with species specializing on a specific resource (e.g., Chloroflexi) or being a generalist (e.g., Planctomycetes and Gammaproteobacteria). Our results offer the first direct links between legacy and priming effects on bacterial community composition and demonstrate that these mechanisms are not always complimentary leading to the formation of similar communities but may both be essential to maintain the high levels of bacterial diversity. Further, all resources produced elicited responders that were either specialists of generalists demonstrating that even bacteria in the extreme environment of Antarctica respond to pulses of resources.</p>10a454 pyrosequencing10aAntarctica10abacteria10amicrobial ecology10asoil10asoil ecology10astable isotope probing10atarget metagenomics1 aSaurey, Sabrina, D.1 aAanderud, Zachary, T.  uhttp://hdl.lib.byu.edu/1877/etd6229