02735nas a2200325   4500008004100000022001400041245008600055210006900141260001200210490000700222520179000229653001502019653001302034653001002047653002202057653001002079100002602089700002402115700002502139700002102164700001802185700002502203700002102228700002202249700001902271700002402290700002102314700001702335856005702352       2025                        eng d  a0722-406000aA comprehensive survey of soil microbial diversity across the Antarctic continent0 acomprehensive survey of soil microbial diversity across the Anta  c02/20250 v483 a<p>Antarctic soils are unique from those found nearly anywhere else on Earth yet can still harbor a broad diversity of microorganisms able to tolerate the challenging conditions typical of the continent. For these reasons, microbiologists have been drawn to Antarctica for decades. However, our understanding of which microbes thrive in Antarctic soils and how they to do so remains limited. To help resolve these knowledge gaps, we analyzed a collection of 200 archived Antarctic soils&mdash;from Livingston Island on the Antarctic Peninsula to Cape Hallett in northern Victoria Land. We analyzed the prokaryotic and fungal communities in these soils using both cultivation-independent marker gene sequencing and cultivation-dependent approaches (microbial isolation), paired with extensive soil geochemical analyses. Our cultivation-independent analyses indicate that colder, saltier, and drier soils harbor less diverse communities of bacteria and fungi, distinct from those found in soils with less challenging conditions. We also built a culture collection from a subset of these soils that encompasses more than 50 bacterial and fungal genera, including cold-tolerant organisms, such as &lt;i&gt;Cryobacterium&lt;/i&gt; and &lt;i&gt;Cryomyces&lt;/i&gt;. By directly comparing the diversity of our cultured isolates against our cultivation-independent data, we show that many of the more abundant Antarctic taxa are not readily cultivated and highlight bacterial and fungal taxa that should be the focus of future cultivation efforts. Together, we hope that our collection of isolates, the comprehensive data compiled from the cultivation-independent analyses, and our geochemical analyses will serve as a community resource to accelerate the study of Antarctic soil microbes.</p>10aAntarctica10abacteria10afungi10amicrobial ecology10asoils1 aDragone, Nicholas, B.1 aChildress, Mary, K.1 aVanderburgh, Caihong1 aWillmore, Rachel1 aHogg, Ian, D.1 aSancho, Leopoldo, G.1 aLee, Charles, K.1 aBarrett, John, E.1 aQuandt, Alisha1 aLeMonte, Joshua, J.1 aAdams, Byron, J.1 aFierer, Noah  uhttps://link.springer.com/10.1007/s00300-025-03372-y02238nas a2200205   4500008004100000245004700041210004700088260004800135490001000183520164300193653001501836653002901851653002201880653001901902653001001921653001001931100002601941700001701967856004801984       2023                        eng d00aMicrobial life in challenging environments0 aMicrobial life in challenging environments  aBoulder, CObUniversity of Colorado Boulder0 vPh.D.3 a<p>Microorganisms are nearly ubiquitous on Earth, but the identity and function of microbial communities are inherently dependent on the properties of the specific environment in question. Here, I have studied soils around the world to answer questions about how the functional attributes of microorganisms allow them to respond to challenging environmental conditions. First, I explore how microbial communities in soils change across environmental gradients in Antarctica. I show that microbes in Antarctic surface soils are most restricted by low temperatures, low water availability, and high concentrations of salt. Microbial communities near the polar plateau, the most challenging environment, are dominated by Actinobacteria and Chloroflexi, and are enriched in genes associated with the oxidation of hydrogen gas as an energy source. Second, I show that the earliest microbial colonizers of a newly-formed volcanic island in the Kingdom of Tonga are chemolithotrophs that appear to have come from nearby geothermal systems. While many of these microbes utilize sulfur as an energy source, the most abundant organisms have genes that indicate they can oxidize trace gases including carbon monoxide and hydrogen. Finally, I show that organisms associated with carbon limited subsurface soils tend to have smaller genomes, grow more slowly, and have more gene pathways associated with metabolism and the storage of carbon. Taken together, these studies shed light on microbial survival in challenging soil environments and show the varied ways in which microbial communities interact with and are affected by their surroundings.</p>10aAntarctica10aenvironmental conditions10amicrobial ecology10amicroorganisms10asoils10atonga1 aDragone, Nicholas, B.1 aFierer, Noah  uhttps://www.proquest.com/docview/281473420902367nas a2200289   4500008004100000245011400041210006900155260001200224300001400236490000600250520147700256653001501733653002201748653002201770653001001792100002601802700002401828700002701852700002101879700001801900700001701918700002001935700001701955700001701972700002401989856006402013       2022                        eng d00aElevational constraints on the composition and genomic attributes of microbial communities in Antarctic soils0 aElevational constraints on the composition and genomic attribute  c01/2022  ae01330-210 v73 a<p>The inland soils found on the Antarctic continent represent one of the more challenging environments for microbial life on Earth. Nevertheless, Antarctic soils harbor unique bacterial and archaeal (prokaryotic) communities able to cope with extremely cold and dry conditions. These communities are not homogeneous, and the taxonomic composition and functional capabilities (genomic attributes) of these communities across environmental gradients remain largely undetermined. We analyzed the prokaryotic communities in soil samples collected from across the Shackleton Glacier region of Antarctica by coupling quantitative PCR, marker gene amplicon sequencing, and shotgun metagenomic sequencing. We found that elevation was the dominant factor explaining differences in the structures of the soil prokaryotic communities, with the drier and saltier soils found at higher elevations harboring less diverse communities and unique assemblages of cooccurring taxa. The higher-elevation soil communities also had lower maximum potential growth rates (as inferred from metagenome-based estimates of codon usage bias) and an overrepresentation of genes associated with trace gas metabolism. Together, these results highlight the utility of assessing community shifts across pronounced environmental gradients to improve our understanding of the microbial diversity found in Antarctic soils and the strategies used by soil microbes to persist at the limits of habitability.</p>10aAntarctica10amicrobial ecology10asoil microbiology10asoils1 aDragone, Nicholas, B.1 aHenley, Jessica, B.1 aHolland-Moritz, Hannah1 aDiaz, Melisa, A.1 aHogg, Ian, D.1 aLyons, Berry1 aWall, Diana, H.1 aAdams, Byron1 aFierer, Noah1 aMackelprang, Rachel  uhttps://journals.asm.org/doi/full/10.1128/msystems.01330-21