02991nas a2200229 4500008004100000245018700041210006900228260001200297490000700309520217100316653001802487653001102505653001602516653001402532653001802546653001102564100002102575700002202596700002402618700002402642856009502666 2024 eng d00aDrifting along: Using diatoms to track the contribution of microbial mats to particulate organic matter transport in a glacial meltwater stream in the McMurdo Dry Valleys, Antarctica0 aDrifting along Using diatoms to track the contribution of microb c05/20240 v153 a

Flow pulses mobilize particulate organic matter (POM) in streams from the surrounding landscape and streambed. This POM serves as a source of energy and nutrients, as well as a means for organismal dispersal, to downstream communities. In the barren terrestrial landscape of the McMurdo Dry Valleys (MDV) of Antarctica, benthic microbial mats occupying different in-stream habitat types are the dominant POM source in the many glacier-fed streams. Many of these streams experience daily flow peaks that mobilize POM, and diatoms recovered from underlying stream sediments suggest that mat-derived diatoms in the POM are retained there through hyporheic exchange. Yet, ‘how much’ and ‘when’ different in-stream habitat types contribute to POM diatom assemblages is unknown. To quantify the contribution of different in-stream habitat types to POM diatom assemblages, we collected time-integrated POM samples over four diel experiments, which spanned a gradient of flow conditions over three summers. Diatoms from POM samples were identified, quantified, and compared with dominant habitat types (i.e., benthic ‘orange’ mats, marginal ‘black’ mats, and bare sediments). Like bulk POM, diatom cell concentrations followed a clockwise hysteresis pattern with stream discharge over the daily flow cycles, indicating supply limitation. Diatom community analyses showed that different habitat types harbor distinct diatom communities, and mixing models revealed that a substantial proportion of POM diatoms originated from bare sediments during baseflow conditions. Meanwhile, orange and black mats contribute diatoms to POM primarily during daily flow peaks when both cell concentrations and discharge are highest, making mats the most important contributors to POM diatom assemblages at high flows. These observations may help explain the presence of mat-derived diatoms in hyporheic sediments. Our results thus indicate a varying importance of different in-stream habitats to POM generation and export on daily to seasonal timescales, with implications for biogeochemical cycling and the local diatom metacommunity.

10acyanobacteria10adiatom10aflow regime10ahydrology10amicrobial mat10aNostoc1 aStanish, Lee, F.1 aKohler, Tyler, J.1 aDarling, Joshua, P.1 aMcKnight, Diane, M. uhttps://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1352666/full02739nas a2200217 4500008004100000245016100041210006900202260003400271490000900305520201700314653001102331653002402342653001802366653001302384653001502397653001702412653000902429100002202438700002202460856003902482 2023 eng d00aInfluence of landscape-variation in geochemistry on taxonomic and functional composition of microbial mat communities in the McMurdo Dry Valleys, Antarctica0 aInfluence of landscapevariation in geochemistry on taxonomic and aBlacksburg, VAbVirginia Tech0 vM.S.3 a

Microbial communities play critical roles in biogeochemical cycles of aquatic and terrestrial ecosystems, but studies of soil microbial communities have been limited by the diversity and complexity found in most ecosystems. Here we report on work investigating the functional diversity of microbial mat and underlying soil communities in the McMurdo Dry Valleys of Antarctica across a gradient of phosphorus availability on glacial tills of distinct age and mineral composition in Taylor Valley, Antarctica. Microbial mat and soil DNA were extracted and sequenced on an Illumina NextSeq500 in a 150 bp paired end format. Raw sequences were uploaded to the MG-RAST server for processing and annotation. Community taxonomic and functional annotation were determined using the RefSeq and SEED Subsystem databases, respectively. The results revealed significant variation in microbial mat community taxonomic composition between the two tills, strongly associated with visual assessment of mat morphology, e.g., "black" and "orange" mats, and soil N:P ratios. The underlying soil microbial communities did not exhibit significant differences in diversity between the two tills, but community composition varied significantly across gradients of soil chemistry, particularly extractable-phosphate content even within tills. The relative abundance of biogeochemistry-relevant pathways determined from the SEED database varied amongst soil microbial communities between the two tills. For example, microbial mat communities exhibited significant variation in the relative abundance of key nitrogen and phosphorus metabolism associated genes strongly associated with the underlying soil N:P. These results suggest that spatial variation in geochemistry influences the distribution and activity of microbial mats, but that the microbial mats themselves also exert a significant homogenizing effect on the underlying soil communities and some of the key biogeochemical processes they facilitate.

10acarbon10amicrobial community10amicrobial mat10anitrogen10aphosphorus10apolar desert10asoil1 aRisteca, Paul, J.1 aBarrett, John, E. uhttp://hdl.handle.net/10919/11538402206nas a2200229 4500008004100000022001400041245015000055210006900205260001200274300001400286490000700300520141400307653001801721653001501739653001801754100002101772700001601793700001901809700002901828700002601857856009301883 2022 eng d a0954-102000aAntibiotic resistance genes and taxa analysis from mat and planktonic microbiomes of Antarctic perennial ice-covered Lake Fryxell and Lake Bonney0 aAntibiotic resistance genes and taxa analysis from mat and plank c12/2022 a408 - 4220 v343 a

The perennial ice-covered lakes of the Antarctic McMurdo Dry Valleys harbour oligotrophic microbial communities that are separated geographically from other aquatic systems. Their microbiomes include planktonic microbes as well as lift-off mat communities that emerge from the ice. We used the ShortBRED protein family profiler to quantify the antibiotic resistance genes (ARGs) from metagenomes of lift-off mats emerging from ice and from filtered water samples of Lake Fryxell and Lake Bonney. The overall proportion of ARG hits was similar to that found in temperate-zone rural ponds with moderate human inputs. Specific ARGs showed distinct distributions for the two lakes and for mat vs planktonic sources. Metagenomic taxa distributions showed that mat phototrophs consisted mainly of cyanobacteria or Betaproteobacteria, whereas the water column phototrophs were mainly protists. An enrichment culture of the Betaproteobacterium Rhodoferax antarcticus from a Lake Fryxell mat sample showed an unusual mat-forming phenotype not previously reported for this species. Its genome showed no ARGs associated with Betaproteobacteria but had ARGs consistent with a minor Pseudomonas component. The Antarctic lake mats and water showed specific ARGs distinctive to the mat and water sources, but overall ARG levels were similar to those of temperate water bodies with moderate human inputs.

10amicrobial mat10aRhodoferax10aTaylor Valley1 aTallada, Sheetal1 aHall, Grant1 aBarich, Daniel1 aMorgan-Kiss, Rachael, M.1 aSlonczewski, Joan, L. uhttps://www.cambridge.org/core/product/identifier/S0954102022000360/type/journal_article01995nas a2200205 4500008004100000245012000041210006900161260004800230490000900278520132200287653001501609653001101624653001801635653001201653653001501665653001301680100002401693700002401717856004801741 2021 eng d00aControls on microbial mat coverage and diatom species turnover in Antarctic desert streams: A transplant experiment0 aControls on microbial mat coverage and diatom species turnover i aBoulder, CObUniversity of Colorado Boulder0 vM.S.3 a

This thesis evaluates how polar desert streams regulate benthic microbial mat coverage, chlorophyll-a biomass, and diatom species composition. Microbial mats growing on rocks (eplithon) and on sandy substrate (epipelon) were reciprocally transplanted among four glaciers meltwater streams and monitored through time. The selected study streams were Green Creek, Bowles Creek, Delta Stream, Von Guerard Stream in the Lake Fryxell Basin in the McMurdo Dry Valleys, Antarctica. These streams vary in length, streamflow intermittency, and diatom community composition of microbial mats. Results demonstrate that streams strongly control mat biomass (coverage and chlorophyll-a) differently for epilithon and epipelon. However, diatom species composition did not vary between these growth habitats but instead varied by stream, suggesting adaptive niche separation related to environmental conditions. Diatom species composition of transplants in Green Creek became dissimilar from their initial stream communities suggesting downstream dispersal and within stream connectivity regulates community assembly. This experiment confirms that environmental characteristics and intra-stream dispersal processes exert strong control over maintaining microbial mat coverage, biomass accrual, and diatom species composition.

10aAntarctica10adiatom10amicrobial mat10astreams10atransplant10aturnover1 aDarling, Joshua, P.1 aMcKnight, Diane, M. uhttps://www.proquest.com/docview/263459098202314nas a2200265 4500008004100000245012500041210006900166260001200235490000700247520147000254653001501724653001101739653001701750653001801767653001101785653004001796100002201836700001501858700002301873700002201896700002401918700002101942700002101963856006401984 2020 eng d00aEnergetic and environmental constraints on the community structure of benthic microbial mats in Lake Fryxell, Antarctica0 aEnergetic and environmental constraints on the community structu c02/20200 v963 a

Ecological communities are regulated by the flow of energy through environments. Energy flow is typically limited by access to photosynthetically active radiation (PAR) and oxygen concentration (O2). The microbial mats growing on the bottom of Lake Fryxell, Antarctica, have well-defined environmental gradients in PAR and (O2). We analyzed the metagenomes of layers from these microbial mats to test the extent to which access to oxygen and light controls community structure. We found variation in the diversity and relative abundances of Archaea, Bacteria and Eukaryotes across three (O2) and PAR conditions: high (O2) and maximum PAR, variable (O2) with lower maximum PAR, and low (O2) and maximum PAR. We found distinct communities structured by the optimization of energy use on a millimeter-scale across these conditions. In mat layers where (O2) was saturated, PAR structured the community. In contrast, (O2) positively correlated with diversity and affected the distribution of dominant populations across the three habitats, suggesting that meter-scale diversity is structured by energy availability. Microbial communities changed across covarying gradients of PAR and (O2). The comprehensive metagenomic analysis suggests that the benthic microbial communities in Lake Fryxell are structured by energy flow across both meter- and millimeter-scales.

10aAntarctica10aenergy10aLake Fryxell10amicrobial mat10aOxygen10aPhotosynthetically Active Radiation1 aDillon, Megan, L.1 aHawes, Ian1 aJungblut, Anne, D.1 aMackey, Tyler, J.1 aEisen, Jonathan, A.1 aDoran, Peter, T.1 aSumner, Dawn, Y. uhttps://academic.oup.com/femsec/article/96/2/fiz207/569719602597nas a2200229 4500008004100000245011900041210006900160260001200229520184900241653001502090653001802105653002602123653000902149653001502158653001902173100002102192700002402213700002002237700002102257700002202278856006702300 2020 eng d00aEstimating microbial mat biomass in the McMurdo Dry Valleys, Antarctica using satellite imagery and ground surveys0 aEstimating microbial mat biomass in the McMurdo Dry Valleys Anta c09/20203 a

Cyanobacterial mat communities are the main drivers of primary productivity in the McMurdo Dry Valleys, Antarctica. These microbial communities form laminar mats on desert pavement surfaces adjacent to glacial meltwater streams, ponds, and lakes. The low-density nature of these communities and their patchy distribution make assessments of distribution, biomass, and productivity challenging. We used satellite imagery coupled with in situ surveying, imaging, and sampling to systematically estimate microbial mat biomass in selected wetland regions in Taylor Valley, Antarctica. On January 19th, 2018, the WorldView-2 multispectral satellite acquired an image of our study areas, where we surveyed and sampled seven 100 m2 plots of microbial mats for percent ground cover, ash-free dry mass (AFDM), and pigment content (chlorophyll-a, carotenoids, and scytonemin). Multispectral analyses revealed spectral signatures consistent with photosynthetic activity (relatively strong reflection at near-infrared wavelengths and relatively strong absorption at visible wavelengths), with average normalized difference vegetation index (NDVI) values of 0.09 to 0.28. Strong correlations of microbial mat ground cover (R2 = 0.84), biomass (R2 = 0.74), chlorophyll-a content (R2 = 0.65), and scytonemin content (R2 = 0.98) with logit transformed NDVI values demonstrate that satellite imagery can detect both the presence of microbial mats and their key biological properties. Using the NDVI—biomass correlation we developed, we estimate carbon (C) stocks of 21,715 kg (14.7 g C m−2) in the Canada Glacier Antarctic Specially Protected Area, with an upper and lower limit of 74,871 and 6312 kg of C, respectively.

10aAntarctica10amicrobial mat10amultispectral imagery10aNDVI10aNostocales10aremote sensing1 aPower, Sarah, N.1 aSalvatore, Mark, R.1 aSokol, Eric, R.1 aStanish, Lee, F.1 aBarrett, John, E. uhttps://link.springer.com/article/10.1007%2Fs00300-020-02742-y